Gene : Cagra.2235s0028 C. grandiflora v1.1
Defline:  (1 of 2) PTHR21049 - RIBOPHORIN I Genomic Order:  28
Name:  ? Cagra.2235s0028 Secondary Identifier:  ? PAC:28907731
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2235s0028 0.5kb upstream 0.5kb upstream 3679 true Scaffold2235: 116368-120046 Capsella grandiflora
Cagra.2235s0028 0.5kb upstream 0.5kb upstream 500 false Scaffold2235: 119547-120046 Capsella grandiflora
Cagra.2235s0028 0.5kb downstream 0.5kb downstream 3679 true Scaffold2235: 115868-119546 Capsella grandiflora
Cagra.2235s0028 0.5kb downstream 0.5kb downstream 500 false Scaffold2235: 115868-116367 Capsella grandiflora
Cagra.2235s0028 1.0kb upstream 1.0kb upstream 4179 true Scaffold2235: 116368-120546 Capsella grandiflora
Cagra.2235s0028 1.0kb upstream 1.0kb upstream 1000 false Scaffold2235: 119547-120546 Capsella grandiflora
Cagra.2235s0028 1.0kb downstream 1.0kb downstream 4179 true Scaffold2235: 115368-119546 Capsella grandiflora
Cagra.2235s0028 1.0kb downstream 1.0kb downstream 1000 false Scaffold2235: 115368-116367 Capsella grandiflora
Cagra.2235s0028 2.0kb upstream 2.0kb upstream 5179 true Scaffold2235: 116368-121546 Capsella grandiflora
Cagra.2235s0028 2.0kb upstream 2.0kb upstream 2000 false Scaffold2235: 119547-121546 Capsella grandiflora
Cagra.2235s0028 2.0kb downstream 2.0kb downstream 5179 true Scaffold2235: 114368-119546 Capsella grandiflora
Cagra.2235s0028 2.0kb downstream 2.0kb downstream 2000 false Scaffold2235: 114368-116367 Capsella grandiflora
Cagra.2235s0028 5.0kb upstream 5.0kb upstream 8179 true Scaffold2235: 116368-124546 Capsella grandiflora
Cagra.2235s0028 5.0kb upstream 5.0kb upstream 5000 false Scaffold2235: 119547-124546 Capsella grandiflora
Cagra.2235s0028 5.0kb downstream 5.0kb downstream 8179 true Scaffold2235: 111368-119546 Capsella grandiflora
Cagra.2235s0028 5.0kb downstream 5.0kb downstream 5000 false Scaffold2235: 111368-116367 Capsella grandiflora
Cagra.2235s0028 10.0kb upstream 10.0kb upstream 13179 true Scaffold2235: 116368-129546 Capsella grandiflora
Cagra.2235s0028 10.0kb upstream 10.0kb upstream 10000 false Scaffold2235: 119547-129546 Capsella grandiflora
Cagra.2235s0028 10.0kb downstream 10.0kb downstream 13179 true Scaffold2235: 106368-119546 Capsella grandiflora
Cagra.2235s0028 10.0kb downstream 10.0kb downstream 10000 false Scaffold2235: 106368-116367 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368155 5261 Brassicaceae View MSA
123839296 5264 Brassicales-Malvales View MSA
124338383 5266 SBM View MSA
124238095 5268 Malvidae View MSA
124062432 5270 Rosid View MSA
123739832 5271 Pentapetalae View MSA
122788147 5272 Eudicot View MSA
122045839 5273 Angiosperm View MSA
121344517 5274 Embryophyte View MSA
123425585 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain