Gene : Cagra.2236s0030 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11670:SF40 - ACONITATE HYDRATASE 1 Genomic Order:  30
Name:  ? Cagra.2236s0030 Secondary Identifier:  ? PAC:28906619
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLYOXYLATE-BYPASS Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY-561 Capsella grandiflora pathologic  
Cgrandiflora PWY-5690 Capsella grandiflora pathologic  
Cgrandiflora PWY-6549 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2236s0030 0.5kb upstream 0.5kb upstream 5948 true Scaffold2236: 108572-114519 Capsella grandiflora
Cagra.2236s0030 0.5kb upstream 0.5kb upstream 500 false Scaffold2236: 108572-109071 Capsella grandiflora
Cagra.2236s0030 0.5kb downstream 0.5kb downstream 5948 true Scaffold2236: 109072-115019 Capsella grandiflora
Cagra.2236s0030 0.5kb downstream 0.5kb downstream 500 false Scaffold2236: 114520-115019 Capsella grandiflora
Cagra.2236s0030 1.0kb upstream 1.0kb upstream 6448 true Scaffold2236: 108072-114519 Capsella grandiflora
Cagra.2236s0030 1.0kb upstream 1.0kb upstream 1000 false Scaffold2236: 108072-109071 Capsella grandiflora
Cagra.2236s0030 1.0kb downstream 1.0kb downstream 6448 true Scaffold2236: 109072-115519 Capsella grandiflora
Cagra.2236s0030 1.0kb downstream 1.0kb downstream 1000 false Scaffold2236: 114520-115519 Capsella grandiflora
Cagra.2236s0030 2.0kb upstream 2.0kb upstream 7448 true Scaffold2236: 107072-114519 Capsella grandiflora
Cagra.2236s0030 2.0kb upstream 2.0kb upstream 2000 false Scaffold2236: 107072-109071 Capsella grandiflora
Cagra.2236s0030 2.0kb downstream 2.0kb downstream 7448 true Scaffold2236: 109072-116519 Capsella grandiflora
Cagra.2236s0030 2.0kb downstream 2.0kb downstream 2000 false Scaffold2236: 114520-116519 Capsella grandiflora
Cagra.2236s0030 5.0kb upstream 5.0kb upstream 10448 true Scaffold2236: 104072-114519 Capsella grandiflora
Cagra.2236s0030 5.0kb upstream 5.0kb upstream 5000 false Scaffold2236: 104072-109071 Capsella grandiflora
Cagra.2236s0030 5.0kb downstream 5.0kb downstream 10448 true Scaffold2236: 109072-119519 Capsella grandiflora
Cagra.2236s0030 5.0kb downstream 5.0kb downstream 5000 false Scaffold2236: 114520-119519 Capsella grandiflora
Cagra.2236s0030 10.0kb upstream 10.0kb upstream 15448 true Scaffold2236: 99072-114519 Capsella grandiflora
Cagra.2236s0030 10.0kb upstream 10.0kb upstream 10000 false Scaffold2236: 99072-109071 Capsella grandiflora
Cagra.2236s0030 10.0kb downstream 10.0kb downstream 15448 true Scaffold2236: 109072-124519 Capsella grandiflora
Cagra.2236s0030 10.0kb downstream 10.0kb downstream 10000 false Scaffold2236: 114520-124519 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379394 5261 Brassicaceae View MSA
123836959 5264 Brassicales-Malvales View MSA
124346925 5266 SBM View MSA
124245948 5268 Malvidae View MSA
124069604 5270 Rosid View MSA
123752886 5271 Pentapetalae View MSA
122795491 5272 Eudicot View MSA
122043810 5273 Angiosperm View MSA
121344247 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain