Gene : Cagra.2236s0042 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12161:SF19 - REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  42
Name:  ? Cagra.2236s0042 Secondary Identifier:  ? PAC:28906594
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2236s0042 0.5kb upstream 0.5kb upstream 2846 true Scaffold2236: 153881-156726 Capsella grandiflora
Cagra.2236s0042 0.5kb upstream 0.5kb upstream 500 false Scaffold2236: 156227-156726 Capsella grandiflora
Cagra.2236s0042 0.5kb downstream 0.5kb downstream 2846 true Scaffold2236: 153381-156226 Capsella grandiflora
Cagra.2236s0042 0.5kb downstream 0.5kb downstream 500 false Scaffold2236: 153381-153880 Capsella grandiflora
Cagra.2236s0042 1.0kb upstream 1.0kb upstream 3346 true Scaffold2236: 153881-157226 Capsella grandiflora
Cagra.2236s0042 1.0kb upstream 1.0kb upstream 1000 false Scaffold2236: 156227-157226 Capsella grandiflora
Cagra.2236s0042 1.0kb downstream 1.0kb downstream 3346 true Scaffold2236: 152881-156226 Capsella grandiflora
Cagra.2236s0042 1.0kb downstream 1.0kb downstream 1000 false Scaffold2236: 152881-153880 Capsella grandiflora
Cagra.2236s0042 2.0kb upstream 2.0kb upstream 4346 true Scaffold2236: 153881-158226 Capsella grandiflora
Cagra.2236s0042 2.0kb upstream 2.0kb upstream 2000 false Scaffold2236: 156227-158226 Capsella grandiflora
Cagra.2236s0042 2.0kb downstream 2.0kb downstream 4346 true Scaffold2236: 151881-156226 Capsella grandiflora
Cagra.2236s0042 2.0kb downstream 2.0kb downstream 2000 false Scaffold2236: 151881-153880 Capsella grandiflora
Cagra.2236s0042 5.0kb upstream 5.0kb upstream 7346 true Scaffold2236: 153881-161226 Capsella grandiflora
Cagra.2236s0042 5.0kb upstream 5.0kb upstream 5000 false Scaffold2236: 156227-161226 Capsella grandiflora
Cagra.2236s0042 5.0kb downstream 5.0kb downstream 7346 true Scaffold2236: 148881-156226 Capsella grandiflora
Cagra.2236s0042 5.0kb downstream 5.0kb downstream 5000 false Scaffold2236: 148881-153880 Capsella grandiflora
Cagra.2236s0042 10.0kb upstream 10.0kb upstream 12346 true Scaffold2236: 153881-166226 Capsella grandiflora
Cagra.2236s0042 10.0kb upstream 10.0kb upstream 10000 false Scaffold2236: 156227-166226 Capsella grandiflora
Cagra.2236s0042 10.0kb downstream 10.0kb downstream 12346 true Scaffold2236: 143881-156226 Capsella grandiflora
Cagra.2236s0042 10.0kb downstream 10.0kb downstream 10000 false Scaffold2236: 143881-153880 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026573 5273 Angiosperm View MSA
122361871 5261 Brassicaceae View MSA
123834169 5264 Brassicales-Malvales View MSA
124321930 5266 SBM View MSA
124241944 5268 Malvidae View MSA
124050952 5270 Rosid View MSA
123738388 5271 Pentapetalae View MSA
122790971 5272 Eudicot View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain