Gene : Cagra.2204s0006 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11800:SF2 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 Genomic Order:  6
Name:  ? Cagra.2204s0006 Secondary Identifier:  ? PAC:28895059
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2204s0006 0.5kb upstream 0.5kb upstream 2582 true Scaffold2204: 17349-19930 Capsella grandiflora
Cagra.2204s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold2204: 17349-17848 Capsella grandiflora
Cagra.2204s0006 0.5kb downstream 0.5kb downstream 2582 true Scaffold2204: 17849-20430 Capsella grandiflora
Cagra.2204s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold2204: 19931-20430 Capsella grandiflora
Cagra.2204s0006 1.0kb upstream 1.0kb upstream 3082 true Scaffold2204: 16849-19930 Capsella grandiflora
Cagra.2204s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold2204: 16849-17848 Capsella grandiflora
Cagra.2204s0006 1.0kb downstream 1.0kb downstream 3082 true Scaffold2204: 17849-20930 Capsella grandiflora
Cagra.2204s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold2204: 19931-20930 Capsella grandiflora
Cagra.2204s0006 2.0kb upstream 2.0kb upstream 4082 true Scaffold2204: 15849-19930 Capsella grandiflora
Cagra.2204s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold2204: 15849-17848 Capsella grandiflora
Cagra.2204s0006 2.0kb downstream 2.0kb downstream 4082 true Scaffold2204: 17849-21930 Capsella grandiflora
Cagra.2204s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold2204: 19931-21930 Capsella grandiflora
Cagra.2204s0006 5.0kb upstream 5.0kb upstream 7082 true Scaffold2204: 12849-19930 Capsella grandiflora
Cagra.2204s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold2204: 12849-17848 Capsella grandiflora
Cagra.2204s0006 5.0kb downstream 5.0kb downstream 7082 true Scaffold2204: 17849-24930 Capsella grandiflora
Cagra.2204s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold2204: 19931-24930 Capsella grandiflora
Cagra.2204s0006 10.0kb upstream 10.0kb upstream 12082 true Scaffold2204: 7849-19930 Capsella grandiflora
Cagra.2204s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold2204: 7849-17848 Capsella grandiflora
Cagra.2204s0006 10.0kb downstream 10.0kb downstream 9664 true Scaffold2204: 17849-27512 Capsella grandiflora
Cagra.2204s0006 10.0kb downstream 10.0kb downstream 7582 false Scaffold2204: 19931-27512 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367399 5261 Brassicaceae View MSA
123829336 5264 Brassicales-Malvales View MSA
124340753 5266 SBM View MSA
124241953 5268 Malvidae View MSA
124066500 5270 Rosid View MSA
123743057 5271 Pentapetalae View MSA
122793148 5272 Eudicot View MSA
122045385 5273 Angiosperm View MSA
121347038 5274 Embryophyte View MSA
123424070 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain