Gene : Cagra.2175s0008 C. grandiflora v1.1
Defline:  (1 of 4) 1.1.1.95 - Phosphoglycerate dehydrogenase / Phosphoglyceric acid dehydrogenase Genomic Order:  8
Name:  ? Cagra.2175s0008 Secondary Identifier:  ? PAC:28895815
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora SER-GLYSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora SERSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2175s0008 0.5kb upstream 0.5kb upstream 4414 true Scaffold2175: 28205-32618 Capsella grandiflora
Cagra.2175s0008 0.5kb upstream 0.5kb upstream 500 false Scaffold2175: 28205-28704 Capsella grandiflora
Cagra.2175s0008 0.5kb downstream 0.5kb downstream 4414 true Scaffold2175: 28705-33118 Capsella grandiflora
Cagra.2175s0008 0.5kb downstream 0.5kb downstream 500 false Scaffold2175: 32619-33118 Capsella grandiflora
Cagra.2175s0008 1.0kb upstream 1.0kb upstream 4914 true Scaffold2175: 27705-32618 Capsella grandiflora
Cagra.2175s0008 1.0kb upstream 1.0kb upstream 1000 false Scaffold2175: 27705-28704 Capsella grandiflora
Cagra.2175s0008 1.0kb downstream 1.0kb downstream 4914 true Scaffold2175: 28705-33618 Capsella grandiflora
Cagra.2175s0008 1.0kb downstream 1.0kb downstream 1000 false Scaffold2175: 32619-33618 Capsella grandiflora
Cagra.2175s0008 2.0kb upstream 2.0kb upstream 5914 true Scaffold2175: 26705-32618 Capsella grandiflora
Cagra.2175s0008 2.0kb upstream 2.0kb upstream 2000 false Scaffold2175: 26705-28704 Capsella grandiflora
Cagra.2175s0008 2.0kb downstream 2.0kb downstream 5914 true Scaffold2175: 28705-34618 Capsella grandiflora
Cagra.2175s0008 2.0kb downstream 2.0kb downstream 2000 false Scaffold2175: 32619-34618 Capsella grandiflora
Cagra.2175s0008 5.0kb upstream 5.0kb upstream 8914 true Scaffold2175: 23705-32618 Capsella grandiflora
Cagra.2175s0008 5.0kb upstream 5.0kb upstream 5000 false Scaffold2175: 23705-28704 Capsella grandiflora
Cagra.2175s0008 5.0kb downstream 5.0kb downstream 8914 true Scaffold2175: 28705-37618 Capsella grandiflora
Cagra.2175s0008 5.0kb downstream 5.0kb downstream 5000 false Scaffold2175: 32619-37618 Capsella grandiflora
Cagra.2175s0008 10.0kb upstream 10.0kb upstream 13914 true Scaffold2175: 18705-32618 Capsella grandiflora
Cagra.2175s0008 10.0kb upstream 10.0kb upstream 10000 false Scaffold2175: 18705-28704 Capsella grandiflora
Cagra.2175s0008 10.0kb downstream 10.0kb downstream 13914 true Scaffold2175: 28705-42618 Capsella grandiflora
Cagra.2175s0008 10.0kb downstream 10.0kb downstream 10000 false Scaffold2175: 32619-42618 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363628 5261 Brassicaceae View MSA
123837054 5264 Brassicales-Malvales View MSA
124346998 5266 SBM View MSA
124246038 5268 Malvidae View MSA
124069252 5270 Rosid View MSA
123744106 5271 Pentapetalae View MSA
122795023 5272 Eudicot View MSA
122044765 5273 Angiosperm View MSA
121347094 5274 Embryophyte View MSA
123427510 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain