Gene : Cagra.2175s0012 C. grandiflora v1.1
Defline:  (1 of 3) PTHR22880:SF172 - TRANSCRIPTION FACTOR GTE3, CHLOROPLASTIC-RELATED Genomic Order:  12
Name:  ? Cagra.2175s0012 Secondary Identifier:  ? PAC:28895806
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2175s0012 0.5kb upstream 0.5kb upstream 2638 true Scaffold2175: 53065-55702 Capsella grandiflora
Cagra.2175s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold2175: 55203-55702 Capsella grandiflora
Cagra.2175s0012 0.5kb downstream 0.5kb downstream 2638 true Scaffold2175: 52565-55202 Capsella grandiflora
Cagra.2175s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold2175: 52565-53064 Capsella grandiflora
Cagra.2175s0012 1.0kb upstream 1.0kb upstream 3138 true Scaffold2175: 53065-56202 Capsella grandiflora
Cagra.2175s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold2175: 55203-56202 Capsella grandiflora
Cagra.2175s0012 1.0kb downstream 1.0kb downstream 3138 true Scaffold2175: 52065-55202 Capsella grandiflora
Cagra.2175s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold2175: 52065-53064 Capsella grandiflora
Cagra.2175s0012 2.0kb upstream 2.0kb upstream 4138 true Scaffold2175: 53065-57202 Capsella grandiflora
Cagra.2175s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold2175: 55203-57202 Capsella grandiflora
Cagra.2175s0012 2.0kb downstream 2.0kb downstream 4138 true Scaffold2175: 51065-55202 Capsella grandiflora
Cagra.2175s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold2175: 51065-53064 Capsella grandiflora
Cagra.2175s0012 5.0kb upstream 5.0kb upstream 7138 true Scaffold2175: 53065-60202 Capsella grandiflora
Cagra.2175s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold2175: 55203-60202 Capsella grandiflora
Cagra.2175s0012 5.0kb downstream 5.0kb downstream 7138 true Scaffold2175: 48065-55202 Capsella grandiflora
Cagra.2175s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold2175: 48065-53064 Capsella grandiflora
Cagra.2175s0012 10.0kb upstream 10.0kb upstream 12138 true Scaffold2175: 53065-65202 Capsella grandiflora
Cagra.2175s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold2175: 55203-65202 Capsella grandiflora
Cagra.2175s0012 10.0kb downstream 10.0kb downstream 12138 true Scaffold2175: 43065-55202 Capsella grandiflora
Cagra.2175s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold2175: 43065-53064 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377887 5261 Brassicaceae View MSA
123801665 5264 Brassicales-Malvales View MSA
124298942 5266 SBM View MSA
124253810 5268 Malvidae View MSA
124051419 5270 Rosid View MSA
123750447 5271 Pentapetalae View MSA
122794064 5272 Eudicot View MSA
122046365 5273 Angiosperm View MSA
123429103 5275 Viridiplantae View MSA
121348953 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain