Gene : Cagra.2179s0010 C. grandiflora v1.1
Defline:  (1 of 11) PF07899 - Frigida-like protein (Frigida) Genomic Order:  10
Name:  ? Cagra.2179s0010 Secondary Identifier:  ? PAC:28918676
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2179s0010 0.5kb upstream 0.5kb upstream 3270 true Scaffold2179: 23509-26778 Capsella grandiflora
Cagra.2179s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold2179: 26279-26778 Capsella grandiflora
Cagra.2179s0010 0.5kb downstream 0.5kb downstream 3270 true Scaffold2179: 23009-26278 Capsella grandiflora
Cagra.2179s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold2179: 23009-23508 Capsella grandiflora
Cagra.2179s0010 1.0kb upstream 1.0kb upstream 3770 true Scaffold2179: 23509-27278 Capsella grandiflora
Cagra.2179s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold2179: 26279-27278 Capsella grandiflora
Cagra.2179s0010 1.0kb downstream 1.0kb downstream 3770 true Scaffold2179: 22509-26278 Capsella grandiflora
Cagra.2179s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold2179: 22509-23508 Capsella grandiflora
Cagra.2179s0010 2.0kb upstream 2.0kb upstream 4770 true Scaffold2179: 23509-28278 Capsella grandiflora
Cagra.2179s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold2179: 26279-28278 Capsella grandiflora
Cagra.2179s0010 2.0kb downstream 2.0kb downstream 4770 true Scaffold2179: 21509-26278 Capsella grandiflora
Cagra.2179s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold2179: 21509-23508 Capsella grandiflora
Cagra.2179s0010 5.0kb upstream 5.0kb upstream 7770 true Scaffold2179: 23509-31278 Capsella grandiflora
Cagra.2179s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold2179: 26279-31278 Capsella grandiflora
Cagra.2179s0010 5.0kb downstream 5.0kb downstream 7770 true Scaffold2179: 18509-26278 Capsella grandiflora
Cagra.2179s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold2179: 18509-23508 Capsella grandiflora
Cagra.2179s0010 10.0kb upstream 10.0kb upstream 12770 true Scaffold2179: 23509-36278 Capsella grandiflora
Cagra.2179s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold2179: 26279-36278 Capsella grandiflora
Cagra.2179s0010 10.0kb downstream 10.0kb downstream 12770 true Scaffold2179: 13509-26278 Capsella grandiflora
Cagra.2179s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold2179: 13509-23508 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122333105 5261 Brassicaceae Singleton cluster - no MSA
123838109 5264 Brassicales-Malvales View MSA
124344107 5266 SBM View MSA
124252866 5268 Malvidae View MSA
124070954 5270 Rosid View MSA
123752761 5271 Pentapetalae View MSA
122774770 5272 Eudicot View MSA
122048785 5273 Angiosperm View MSA
121311111 5274 Embryophyte View MSA
123348454 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain