Gene : Cagra.2407s0003 C. grandiflora v1.1
Defline:  (1 of 2) 5.1.3.1 - Ribulose-phosphate 3-epimerase / Xylulose phosphate 3-epimerase Genomic Order:  3
Name:  ? Cagra.2407s0003 Secondary Identifier:  ? PAC:28893835
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora CALVIN-PWY Capsella grandiflora pathologic  
Cgrandiflora NONOXIPENT-PWY Capsella grandiflora pathologic  
Cgrandiflora PENTOSE-P-PWY Capsella grandiflora pathologic  
Cgrandiflora PHOTOALL-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-5723 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2407s0003 0.5kb upstream 0.5kb upstream 2222 true Scaffold2407: 6970-9191 Capsella grandiflora
Cagra.2407s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold2407: 6970-7469 Capsella grandiflora
Cagra.2407s0003 0.5kb downstream 0.5kb downstream 2222 true Scaffold2407: 7470-9691 Capsella grandiflora
Cagra.2407s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold2407: 9192-9691 Capsella grandiflora
Cagra.2407s0003 1.0kb upstream 1.0kb upstream 2722 true Scaffold2407: 6470-9191 Capsella grandiflora
Cagra.2407s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold2407: 6470-7469 Capsella grandiflora
Cagra.2407s0003 1.0kb downstream 1.0kb downstream 2722 true Scaffold2407: 7470-10191 Capsella grandiflora
Cagra.2407s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold2407: 9192-10191 Capsella grandiflora
Cagra.2407s0003 2.0kb upstream 2.0kb upstream 3722 true Scaffold2407: 5470-9191 Capsella grandiflora
Cagra.2407s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold2407: 5470-7469 Capsella grandiflora
Cagra.2407s0003 2.0kb downstream 2.0kb downstream 3722 true Scaffold2407: 7470-11191 Capsella grandiflora
Cagra.2407s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold2407: 9192-11191 Capsella grandiflora
Cagra.2407s0003 5.0kb upstream 5.0kb upstream 6722 true Scaffold2407: 2470-9191 Capsella grandiflora
Cagra.2407s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold2407: 2470-7469 Capsella grandiflora
Cagra.2407s0003 5.0kb downstream 5.0kb downstream 6722 true Scaffold2407: 7470-14191 Capsella grandiflora
Cagra.2407s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold2407: 9192-14191 Capsella grandiflora
Cagra.2407s0003 10.0kb upstream 10.0kb upstream 9191 true Scaffold2407: 1-9191 Capsella grandiflora
Cagra.2407s0003 10.0kb upstream 10.0kb upstream 7469 false Scaffold2407: 1-7469 Capsella grandiflora
Cagra.2407s0003 10.0kb downstream 10.0kb downstream 11722 true Scaffold2407: 7470-19191 Capsella grandiflora
Cagra.2407s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold2407: 9192-19191 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377398 5261 Brassicaceae View MSA
123840154 5264 Brassicales-Malvales View MSA
124344961 5266 SBM View MSA
124252799 5268 Malvidae View MSA
124064705 5270 Rosid View MSA
123748809 5271 Pentapetalae View MSA
122786225 5272 Eudicot View MSA
122042554 5273 Angiosperm View MSA
121347255 5274 Embryophyte View MSA
123428302 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain