Gene : Cagra.2418s0015 C. grandiflora v1.1
Defline:  (1 of 1) PF04428 - Choline kinase N terminus (Choline_kin_N) Genomic Order:  15
Name:  ? Cagra.2418s0015 Secondary Identifier:  ? PAC:28906124
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-3385 Capsella grandiflora pathologic  
Cgrandiflora PWY4FS-6 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2418s0015 0.5kb upstream 0.5kb upstream 2647 true Scaffold2418: 44364-47010 Capsella grandiflora
Cagra.2418s0015 0.5kb upstream 0.5kb upstream 500 false Scaffold2418: 44364-44863 Capsella grandiflora
Cagra.2418s0015 0.5kb downstream 0.5kb downstream 2647 true Scaffold2418: 44864-47510 Capsella grandiflora
Cagra.2418s0015 0.5kb downstream 0.5kb downstream 500 false Scaffold2418: 47011-47510 Capsella grandiflora
Cagra.2418s0015 1.0kb upstream 1.0kb upstream 3147 true Scaffold2418: 43864-47010 Capsella grandiflora
Cagra.2418s0015 1.0kb upstream 1.0kb upstream 1000 false Scaffold2418: 43864-44863 Capsella grandiflora
Cagra.2418s0015 1.0kb downstream 1.0kb downstream 3147 true Scaffold2418: 44864-48010 Capsella grandiflora
Cagra.2418s0015 1.0kb downstream 1.0kb downstream 1000 false Scaffold2418: 47011-48010 Capsella grandiflora
Cagra.2418s0015 2.0kb upstream 2.0kb upstream 4147 true Scaffold2418: 42864-47010 Capsella grandiflora
Cagra.2418s0015 2.0kb upstream 2.0kb upstream 2000 false Scaffold2418: 42864-44863 Capsella grandiflora
Cagra.2418s0015 2.0kb downstream 2.0kb downstream 4147 true Scaffold2418: 44864-49010 Capsella grandiflora
Cagra.2418s0015 2.0kb downstream 2.0kb downstream 2000 false Scaffold2418: 47011-49010 Capsella grandiflora
Cagra.2418s0015 5.0kb upstream 5.0kb upstream 7147 true Scaffold2418: 39864-47010 Capsella grandiflora
Cagra.2418s0015 5.0kb upstream 5.0kb upstream 5000 false Scaffold2418: 39864-44863 Capsella grandiflora
Cagra.2418s0015 5.0kb downstream 5.0kb downstream 7147 true Scaffold2418: 44864-52010 Capsella grandiflora
Cagra.2418s0015 5.0kb downstream 5.0kb downstream 5000 false Scaffold2418: 47011-52010 Capsella grandiflora
Cagra.2418s0015 10.0kb upstream 10.0kb upstream 12147 true Scaffold2418: 34864-47010 Capsella grandiflora
Cagra.2418s0015 10.0kb upstream 10.0kb upstream 10000 false Scaffold2418: 34864-44863 Capsella grandiflora
Cagra.2418s0015 10.0kb downstream 10.0kb downstream 12147 true Scaffold2418: 44864-57010 Capsella grandiflora
Cagra.2418s0015 10.0kb downstream 10.0kb downstream 10000 false Scaffold2418: 47011-57010 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363118 5261 Brassicaceae View MSA
123840519 5264 Brassicales-Malvales View MSA
124340711 5266 SBM View MSA
124247486 5268 Malvidae View MSA
124069180 5270 Rosid View MSA
123746925 5271 Pentapetalae View MSA
122797485 5272 Eudicot View MSA
122047896 5273 Angiosperm View MSA
121347088 5274 Embryophyte View MSA
123426626 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain