Gene : Cagra.2381s0009 C. grandiflora v1.1
Defline:  (1 of 1) PF00004//PF02861//PF07724//PF10431 - ATPase family associated with various cellular activities (AAA) (AAA) // Clp amino terminal domain, pathogenicity island component (Clp_N) // AAA domain (Cdc48 subfamily) (AAA_2) // C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) Genomic Order:  9
Name:  ? Cagra.2381s0009 Secondary Identifier:  ? PAC:28900784
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2381s0009 0.5kb upstream 0.5kb upstream 3398 true Scaffold2381: 34662-38059 Capsella grandiflora
Cagra.2381s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold2381: 34662-35161 Capsella grandiflora
Cagra.2381s0009 0.5kb downstream 0.5kb downstream 3398 true Scaffold2381: 35162-38559 Capsella grandiflora
Cagra.2381s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold2381: 38060-38559 Capsella grandiflora
Cagra.2381s0009 1.0kb upstream 1.0kb upstream 3898 true Scaffold2381: 34162-38059 Capsella grandiflora
Cagra.2381s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold2381: 34162-35161 Capsella grandiflora
Cagra.2381s0009 1.0kb downstream 1.0kb downstream 3898 true Scaffold2381: 35162-39059 Capsella grandiflora
Cagra.2381s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold2381: 38060-39059 Capsella grandiflora
Cagra.2381s0009 2.0kb upstream 2.0kb upstream 4898 true Scaffold2381: 33162-38059 Capsella grandiflora
Cagra.2381s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold2381: 33162-35161 Capsella grandiflora
Cagra.2381s0009 2.0kb downstream 2.0kb downstream 4898 true Scaffold2381: 35162-40059 Capsella grandiflora
Cagra.2381s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold2381: 38060-40059 Capsella grandiflora
Cagra.2381s0009 5.0kb upstream 5.0kb upstream 7898 true Scaffold2381: 30162-38059 Capsella grandiflora
Cagra.2381s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold2381: 30162-35161 Capsella grandiflora
Cagra.2381s0009 5.0kb downstream 5.0kb downstream 7898 true Scaffold2381: 35162-43059 Capsella grandiflora
Cagra.2381s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold2381: 38060-43059 Capsella grandiflora
Cagra.2381s0009 10.0kb upstream 10.0kb upstream 12898 true Scaffold2381: 25162-38059 Capsella grandiflora
Cagra.2381s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold2381: 25162-35161 Capsella grandiflora
Cagra.2381s0009 10.0kb downstream 10.0kb downstream 12898 true Scaffold2381: 35162-48059 Capsella grandiflora
Cagra.2381s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold2381: 38060-48059 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122382074 5261 Brassicaceae View MSA
123803648 5264 Brassicales-Malvales View MSA
124300737 5266 SBM View MSA
124255654 5268 Malvidae View MSA
124072221 5270 Rosid View MSA
123747795 5271 Pentapetalae View MSA
122795236 5272 Eudicot View MSA
122050456 5273 Angiosperm View MSA
121347252 5274 Embryophyte View MSA
123425862 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain