Gene : Cagra.2519s0025 C. grandiflora v1.1
Defline:  (1 of 6) PF06830 - Root cap (Root_cap) Genomic Order:  25
Name:  ? Cagra.2519s0025 Secondary Identifier:  ? PAC:28903923
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2519s0025 0.5kb upstream 0.5kb upstream 1973 true Scaffold2519: 77302-79274 Capsella grandiflora
Cagra.2519s0025 0.5kb upstream 0.5kb upstream 500 false Scaffold2519: 78775-79274 Capsella grandiflora
Cagra.2519s0025 0.5kb downstream 0.5kb downstream 1973 true Scaffold2519: 76802-78774 Capsella grandiflora
Cagra.2519s0025 0.5kb downstream 0.5kb downstream 500 false Scaffold2519: 76802-77301 Capsella grandiflora
Cagra.2519s0025 1.0kb upstream 1.0kb upstream 2473 true Scaffold2519: 77302-79774 Capsella grandiflora
Cagra.2519s0025 1.0kb upstream 1.0kb upstream 1000 false Scaffold2519: 78775-79774 Capsella grandiflora
Cagra.2519s0025 1.0kb downstream 1.0kb downstream 2473 true Scaffold2519: 76302-78774 Capsella grandiflora
Cagra.2519s0025 1.0kb downstream 1.0kb downstream 1000 false Scaffold2519: 76302-77301 Capsella grandiflora
Cagra.2519s0025 2.0kb upstream 2.0kb upstream 3473 true Scaffold2519: 77302-80774 Capsella grandiflora
Cagra.2519s0025 2.0kb upstream 2.0kb upstream 2000 false Scaffold2519: 78775-80774 Capsella grandiflora
Cagra.2519s0025 2.0kb downstream 2.0kb downstream 3473 true Scaffold2519: 75302-78774 Capsella grandiflora
Cagra.2519s0025 2.0kb downstream 2.0kb downstream 2000 false Scaffold2519: 75302-77301 Capsella grandiflora
Cagra.2519s0025 5.0kb upstream 5.0kb upstream 6473 true Scaffold2519: 77302-83774 Capsella grandiflora
Cagra.2519s0025 5.0kb upstream 5.0kb upstream 5000 false Scaffold2519: 78775-83774 Capsella grandiflora
Cagra.2519s0025 5.0kb downstream 5.0kb downstream 6473 true Scaffold2519: 72302-78774 Capsella grandiflora
Cagra.2519s0025 5.0kb downstream 5.0kb downstream 5000 false Scaffold2519: 72302-77301 Capsella grandiflora
Cagra.2519s0025 10.0kb upstream 10.0kb upstream 11473 true Scaffold2519: 77302-88774 Capsella grandiflora
Cagra.2519s0025 10.0kb upstream 10.0kb upstream 10000 false Scaffold2519: 78775-88774 Capsella grandiflora
Cagra.2519s0025 10.0kb downstream 10.0kb downstream 11473 true Scaffold2519: 67302-78774 Capsella grandiflora
Cagra.2519s0025 10.0kb downstream 10.0kb downstream 10000 false Scaffold2519: 67302-77301 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378455 5261 Brassicaceae View MSA
123835508 5264 Brassicales-Malvales View MSA
124343084 5266 SBM View MSA
124246752 5268 Malvidae View MSA
124061597 5270 Rosid View MSA
123752203 5271 Pentapetalae View MSA
122797654 5272 Eudicot View MSA
122050447 5273 Angiosperm View MSA
121349873 5274 Embryophyte View MSA
123381481 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain