Gene : Cagra.2515s0046 C. grandiflora v1.1
Defline:  (1 of 2) PTHR12181:SF12 - PROTEIN LPIN-1 Genomic Order:  46
Name:  ? Cagra.2515s0046 Secondary Identifier:  ? PAC:28894425
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRIGLSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2515s0046 0.5kb upstream 0.5kb upstream 5559 true Scaffold2515: 140793-146351 Capsella grandiflora
Cagra.2515s0046 0.5kb upstream 0.5kb upstream 500 false Scaffold2515: 145852-146351 Capsella grandiflora
Cagra.2515s0046 0.5kb downstream 0.5kb downstream 5559 true Scaffold2515: 140293-145851 Capsella grandiflora
Cagra.2515s0046 0.5kb downstream 0.5kb downstream 500 false Scaffold2515: 140293-140792 Capsella grandiflora
Cagra.2515s0046 1.0kb upstream 1.0kb upstream 6059 true Scaffold2515: 140793-146851 Capsella grandiflora
Cagra.2515s0046 1.0kb upstream 1.0kb upstream 1000 false Scaffold2515: 145852-146851 Capsella grandiflora
Cagra.2515s0046 1.0kb downstream 1.0kb downstream 6059 true Scaffold2515: 139793-145851 Capsella grandiflora
Cagra.2515s0046 1.0kb downstream 1.0kb downstream 1000 false Scaffold2515: 139793-140792 Capsella grandiflora
Cagra.2515s0046 2.0kb upstream 2.0kb upstream 7059 true Scaffold2515: 140793-147851 Capsella grandiflora
Cagra.2515s0046 2.0kb upstream 2.0kb upstream 2000 false Scaffold2515: 145852-147851 Capsella grandiflora
Cagra.2515s0046 2.0kb downstream 2.0kb downstream 7059 true Scaffold2515: 138793-145851 Capsella grandiflora
Cagra.2515s0046 2.0kb downstream 2.0kb downstream 2000 false Scaffold2515: 138793-140792 Capsella grandiflora
Cagra.2515s0046 5.0kb upstream 5.0kb upstream 10059 true Scaffold2515: 140793-150851 Capsella grandiflora
Cagra.2515s0046 5.0kb upstream 5.0kb upstream 5000 false Scaffold2515: 145852-150851 Capsella grandiflora
Cagra.2515s0046 5.0kb downstream 5.0kb downstream 10059 true Scaffold2515: 135793-145851 Capsella grandiflora
Cagra.2515s0046 5.0kb downstream 5.0kb downstream 5000 false Scaffold2515: 135793-140792 Capsella grandiflora
Cagra.2515s0046 10.0kb upstream 10.0kb upstream 15059 true Scaffold2515: 140793-155851 Capsella grandiflora
Cagra.2515s0046 10.0kb upstream 10.0kb upstream 10000 false Scaffold2515: 145852-155851 Capsella grandiflora
Cagra.2515s0046 10.0kb downstream 10.0kb downstream 15059 true Scaffold2515: 130793-145851 Capsella grandiflora
Cagra.2515s0046 10.0kb downstream 10.0kb downstream 10000 false Scaffold2515: 130793-140792 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366067 5261 Brassicaceae View MSA
123839656 5264 Brassicales-Malvales View MSA
124322631 5266 SBM View MSA
124248073 5268 Malvidae View MSA
124065604 5270 Rosid View MSA
123741487 5271 Pentapetalae View MSA
122792824 5272 Eudicot View MSA
122048354 5273 Angiosperm View MSA
121350822 5274 Embryophyte View MSA
123381897 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain