Gene : Cagra.2925s0041 C. grandiflora v1.1

Defline:  (1 of 4) PTHR31321:SF23 - PECTINESTERASE PPME1-RELATED Genomic Order:  41
Name:  ? Cagra.2925s0041 Secondary Identifier:  ? PAC:28896672

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2925s0041 0.5kb upstream 0.5kb upstream 1982 true Scaffold2925: 151681-153662 Capsella grandiflora
Cagra.2925s0041 0.5kb upstream 0.5kb upstream 500 false Scaffold2925: 153163-153662 Capsella grandiflora
Cagra.2925s0041 0.5kb downstream 0.5kb downstream 1982 true Scaffold2925: 151181-153162 Capsella grandiflora
Cagra.2925s0041 0.5kb downstream 0.5kb downstream 500 false Scaffold2925: 151181-151680 Capsella grandiflora
Cagra.2925s0041 1.0kb upstream 1.0kb upstream 2482 true Scaffold2925: 151681-154162 Capsella grandiflora
Cagra.2925s0041 1.0kb upstream 1.0kb upstream 1000 false Scaffold2925: 153163-154162 Capsella grandiflora
Cagra.2925s0041 1.0kb downstream 1.0kb downstream 2482 true Scaffold2925: 150681-153162 Capsella grandiflora
Cagra.2925s0041 1.0kb downstream 1.0kb downstream 1000 false Scaffold2925: 150681-151680 Capsella grandiflora
Cagra.2925s0041 2.0kb upstream 2.0kb upstream 3482 true Scaffold2925: 151681-155162 Capsella grandiflora
Cagra.2925s0041 2.0kb upstream 2.0kb upstream 2000 false Scaffold2925: 153163-155162 Capsella grandiflora
Cagra.2925s0041 2.0kb downstream 2.0kb downstream 3482 true Scaffold2925: 149681-153162 Capsella grandiflora
Cagra.2925s0041 2.0kb downstream 2.0kb downstream 2000 false Scaffold2925: 149681-151680 Capsella grandiflora
Cagra.2925s0041 5.0kb upstream 5.0kb upstream 6482 true Scaffold2925: 151681-158162 Capsella grandiflora
Cagra.2925s0041 5.0kb upstream 5.0kb upstream 5000 false Scaffold2925: 153163-158162 Capsella grandiflora
Cagra.2925s0041 5.0kb downstream 5.0kb downstream 6482 true Scaffold2925: 146681-153162 Capsella grandiflora
Cagra.2925s0041 5.0kb downstream 5.0kb downstream 5000 false Scaffold2925: 146681-151680 Capsella grandiflora
Cagra.2925s0041 10.0kb upstream 10.0kb upstream 11482 true Scaffold2925: 151681-163162 Capsella grandiflora
Cagra.2925s0041 10.0kb upstream 10.0kb upstream 10000 false Scaffold2925: 153163-163162 Capsella grandiflora
Cagra.2925s0041 10.0kb downstream 10.0kb downstream 11482 true Scaffold2925: 141681-153162 Capsella grandiflora
Cagra.2925s0041 10.0kb downstream 10.0kb downstream 10000 false Scaffold2925: 141681-151680 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372644 5261 Brassicaceae View MSA
123800403 5264 Brassicales-Malvales View MSA
124297818 5266 SBM View MSA
124253324 5268 Malvidae View MSA
124071696 5270 Rosid View MSA
123740013 5271 Pentapetalae View MSA
122792940 5272 Eudicot View MSA
122051382 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain