Gene : Cagra.2641s0003 C. grandiflora v1.1
Defline:  (1 of 2) PTHR23133 - IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 Genomic Order:  3
Name:  ? Cagra.2641s0003 Secondary Identifier:  ? PAC:28907039
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora HISTSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2641s0003 0.5kb upstream 0.5kb upstream 2361 true Scaffold2641: 12830-15190 Capsella grandiflora
Cagra.2641s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold2641: 12830-13329 Capsella grandiflora
Cagra.2641s0003 0.5kb downstream 0.5kb downstream 2361 true Scaffold2641: 13330-15690 Capsella grandiflora
Cagra.2641s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold2641: 15191-15690 Capsella grandiflora
Cagra.2641s0003 1.0kb upstream 1.0kb upstream 2861 true Scaffold2641: 12330-15190 Capsella grandiflora
Cagra.2641s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold2641: 12330-13329 Capsella grandiflora
Cagra.2641s0003 1.0kb downstream 1.0kb downstream 2861 true Scaffold2641: 13330-16190 Capsella grandiflora
Cagra.2641s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold2641: 15191-16190 Capsella grandiflora
Cagra.2641s0003 2.0kb upstream 2.0kb upstream 3861 true Scaffold2641: 11330-15190 Capsella grandiflora
Cagra.2641s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold2641: 11330-13329 Capsella grandiflora
Cagra.2641s0003 2.0kb downstream 2.0kb downstream 3861 true Scaffold2641: 13330-17190 Capsella grandiflora
Cagra.2641s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold2641: 15191-17190 Capsella grandiflora
Cagra.2641s0003 5.0kb upstream 5.0kb upstream 6861 true Scaffold2641: 8330-15190 Capsella grandiflora
Cagra.2641s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold2641: 8330-13329 Capsella grandiflora
Cagra.2641s0003 5.0kb downstream 5.0kb downstream 6861 true Scaffold2641: 13330-20190 Capsella grandiflora
Cagra.2641s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold2641: 15191-20190 Capsella grandiflora
Cagra.2641s0003 10.0kb upstream 10.0kb upstream 11861 true Scaffold2641: 3330-15190 Capsella grandiflora
Cagra.2641s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold2641: 3330-13329 Capsella grandiflora
Cagra.2641s0003 10.0kb downstream 10.0kb downstream 11861 true Scaffold2641: 13330-25190 Capsella grandiflora
Cagra.2641s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold2641: 15191-25190 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378389 5261 Brassicaceae View MSA
123833237 5264 Brassicales-Malvales View MSA
124344750 5266 SBM View MSA
124241761 5268 Malvidae View MSA
124067658 5270 Rosid View MSA
123737408 5271 Pentapetalae View MSA
122786767 5272 Eudicot View MSA
122045110 5273 Angiosperm View MSA
121344413 5274 Embryophyte View MSA
123423926 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain