Gene : Cagra.2552s0029 C. grandiflora v1.1
Defline:  (1 of 1) PTHR37236:SF1 - AUXIN-BINDING PROTEIN 1 Genomic Order:  29
Name:  ? Cagra.2552s0029 Secondary Identifier:  ? PAC:28895073
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2552s0029 0.5kb upstream 0.5kb upstream 2146 true Scaffold2552: 91800-93945 Capsella grandiflora
Cagra.2552s0029 0.5kb upstream 0.5kb upstream 500 false Scaffold2552: 91800-92299 Capsella grandiflora
Cagra.2552s0029 0.5kb downstream 0.5kb downstream 2146 true Scaffold2552: 92300-94445 Capsella grandiflora
Cagra.2552s0029 0.5kb downstream 0.5kb downstream 500 false Scaffold2552: 93946-94445 Capsella grandiflora
Cagra.2552s0029 1.0kb upstream 1.0kb upstream 2646 true Scaffold2552: 91300-93945 Capsella grandiflora
Cagra.2552s0029 1.0kb upstream 1.0kb upstream 1000 false Scaffold2552: 91300-92299 Capsella grandiflora
Cagra.2552s0029 1.0kb downstream 1.0kb downstream 2646 true Scaffold2552: 92300-94945 Capsella grandiflora
Cagra.2552s0029 1.0kb downstream 1.0kb downstream 1000 false Scaffold2552: 93946-94945 Capsella grandiflora
Cagra.2552s0029 2.0kb upstream 2.0kb upstream 3646 true Scaffold2552: 90300-93945 Capsella grandiflora
Cagra.2552s0029 2.0kb upstream 2.0kb upstream 2000 false Scaffold2552: 90300-92299 Capsella grandiflora
Cagra.2552s0029 2.0kb downstream 2.0kb downstream 3646 true Scaffold2552: 92300-95945 Capsella grandiflora
Cagra.2552s0029 2.0kb downstream 2.0kb downstream 2000 false Scaffold2552: 93946-95945 Capsella grandiflora
Cagra.2552s0029 5.0kb upstream 5.0kb upstream 6646 true Scaffold2552: 87300-93945 Capsella grandiflora
Cagra.2552s0029 5.0kb upstream 5.0kb upstream 5000 false Scaffold2552: 87300-92299 Capsella grandiflora
Cagra.2552s0029 5.0kb downstream 5.0kb downstream 3772 true Scaffold2552: 92300-96071 Capsella grandiflora
Cagra.2552s0029 5.0kb downstream 5.0kb downstream 2126 false Scaffold2552: 93946-96071 Capsella grandiflora
Cagra.2552s0029 10.0kb upstream 10.0kb upstream 11646 true Scaffold2552: 82300-93945 Capsella grandiflora
Cagra.2552s0029 10.0kb upstream 10.0kb upstream 10000 false Scaffold2552: 82300-92299 Capsella grandiflora
Cagra.2552s0029 10.0kb downstream 10.0kb downstream 3772 true Scaffold2552: 92300-96071 Capsella grandiflora
Cagra.2552s0029 10.0kb downstream 10.0kb downstream 2126 false Scaffold2552: 93946-96071 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122333302 5261 Brassicaceae Singleton cluster - no MSA
123841219 5264 Brassicales-Malvales View MSA
124338693 5266 SBM View MSA
124239302 5268 Malvidae View MSA
124068564 5270 Rosid View MSA
123737576 5271 Pentapetalae View MSA
122787976 5272 Eudicot View MSA
122049427 5273 Angiosperm View MSA
121346924 5274 Embryophyte View MSA
123426893 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain