Gene : Cagra.2494s0017 C. grandiflora v1.1
Defline:  (1 of 6) 2.5.1.112 - Adenylate dimethylallyltransferase (ADP/ATP-dependent) / Isopentenyltransferase Genomic Order:  17
Name:  ? Cagra.2494s0017 Secondary Identifier:  ? PAC:28913712
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-2681 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2494s0017 0.5kb upstream 0.5kb upstream 1719 true Scaffold2494: 72170-73888 Capsella grandiflora
Cagra.2494s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold2494: 72170-72669 Capsella grandiflora
Cagra.2494s0017 0.5kb downstream 0.5kb downstream 1719 true Scaffold2494: 72670-74388 Capsella grandiflora
Cagra.2494s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold2494: 73889-74388 Capsella grandiflora
Cagra.2494s0017 1.0kb upstream 1.0kb upstream 2219 true Scaffold2494: 71670-73888 Capsella grandiflora
Cagra.2494s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold2494: 71670-72669 Capsella grandiflora
Cagra.2494s0017 1.0kb downstream 1.0kb downstream 2219 true Scaffold2494: 72670-74888 Capsella grandiflora
Cagra.2494s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold2494: 73889-74888 Capsella grandiflora
Cagra.2494s0017 2.0kb upstream 2.0kb upstream 3219 true Scaffold2494: 70670-73888 Capsella grandiflora
Cagra.2494s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold2494: 70670-72669 Capsella grandiflora
Cagra.2494s0017 2.0kb downstream 2.0kb downstream 3219 true Scaffold2494: 72670-75888 Capsella grandiflora
Cagra.2494s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold2494: 73889-75888 Capsella grandiflora
Cagra.2494s0017 5.0kb upstream 5.0kb upstream 6219 true Scaffold2494: 67670-73888 Capsella grandiflora
Cagra.2494s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold2494: 67670-72669 Capsella grandiflora
Cagra.2494s0017 5.0kb downstream 5.0kb downstream 6219 true Scaffold2494: 72670-78888 Capsella grandiflora
Cagra.2494s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold2494: 73889-78888 Capsella grandiflora
Cagra.2494s0017 10.0kb upstream 10.0kb upstream 11219 true Scaffold2494: 62670-73888 Capsella grandiflora
Cagra.2494s0017 10.0kb upstream 10.0kb upstream 10000 false Scaffold2494: 62670-72669 Capsella grandiflora
Cagra.2494s0017 10.0kb downstream 10.0kb downstream 9990 true Scaffold2494: 72670-82659 Capsella grandiflora
Cagra.2494s0017 10.0kb downstream 10.0kb downstream 8771 false Scaffold2494: 73889-82659 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371498 5261 Brassicaceae View MSA
123829892 5264 Brassicales-Malvales View MSA
124338029 5266 SBM View MSA
124243543 5268 Malvidae View MSA
124067788 5270 Rosid View MSA
123742235 5271 Pentapetalae View MSA
122793817 5272 Eudicot View MSA
122042275 5273 Angiosperm View MSA
121309945 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain