Gene : Cagra.2506s0001 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31065:SF11 - PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN Genomic Order:  1
Name:  ? Cagra.2506s0001 Secondary Identifier:  ? PAC:28909818
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2506s0001 0.5kb upstream 0.5kb upstream 2435 true Scaffold2506: 5395-7829 Capsella grandiflora
Cagra.2506s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold2506: 5395-5894 Capsella grandiflora
Cagra.2506s0001 0.5kb downstream 0.5kb downstream 2435 true Scaffold2506: 5895-8329 Capsella grandiflora
Cagra.2506s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold2506: 7830-8329 Capsella grandiflora
Cagra.2506s0001 1.0kb upstream 1.0kb upstream 2935 true Scaffold2506: 4895-7829 Capsella grandiflora
Cagra.2506s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold2506: 4895-5894 Capsella grandiflora
Cagra.2506s0001 1.0kb downstream 1.0kb downstream 2935 true Scaffold2506: 5895-8829 Capsella grandiflora
Cagra.2506s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold2506: 7830-8829 Capsella grandiflora
Cagra.2506s0001 2.0kb upstream 2.0kb upstream 3935 true Scaffold2506: 3895-7829 Capsella grandiflora
Cagra.2506s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold2506: 3895-5894 Capsella grandiflora
Cagra.2506s0001 2.0kb downstream 2.0kb downstream 3935 true Scaffold2506: 5895-9829 Capsella grandiflora
Cagra.2506s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold2506: 7830-9829 Capsella grandiflora
Cagra.2506s0001 5.0kb upstream 5.0kb upstream 6935 true Scaffold2506: 895-7829 Capsella grandiflora
Cagra.2506s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold2506: 895-5894 Capsella grandiflora
Cagra.2506s0001 5.0kb downstream 5.0kb downstream 6935 true Scaffold2506: 5895-12829 Capsella grandiflora
Cagra.2506s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold2506: 7830-12829 Capsella grandiflora
Cagra.2506s0001 10.0kb upstream 10.0kb upstream 7829 true Scaffold2506: 1-7829 Capsella grandiflora
Cagra.2506s0001 10.0kb upstream 10.0kb upstream 5894 false Scaffold2506: 1-5894 Capsella grandiflora
Cagra.2506s0001 10.0kb downstream 10.0kb downstream 11935 true Scaffold2506: 5895-17829 Capsella grandiflora
Cagra.2506s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold2506: 7830-17829 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373323 5261 Brassicaceae View MSA
123836223 5264 Brassicales-Malvales View MSA
124350180 5266 SBM View MSA
124252918 5268 Malvidae View MSA
124068522 5270 Rosid View MSA
123747069 5271 Pentapetalae View MSA
122791391 5272 Eudicot View MSA
122044768 5273 Angiosperm View MSA
121349888 5274 Embryophyte View MSA
123428703 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain