Gene : Cagra.2552s0007 C. grandiflora v1.1
Defline:  (1 of 2) 1.3.3.3 - Coproporphyrinogen oxidase / Coproporphyrinogenase Genomic Order:  7
Name:  ? Cagra.2552s0007 Secondary Identifier:  ? PAC:28895074
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora CHLOROPHYLL-SYN Capsella grandiflora pathologic  
Cgrandiflora HEME-BIOSYNTHESIS-II Capsella grandiflora pathologic  
Cgrandiflora PWY-5918 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2552s0007 0.5kb upstream 0.5kb upstream 2631 true Scaffold2552: 20991-23621 Capsella grandiflora
Cagra.2552s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold2552: 23122-23621 Capsella grandiflora
Cagra.2552s0007 0.5kb downstream 0.5kb downstream 2631 true Scaffold2552: 20491-23121 Capsella grandiflora
Cagra.2552s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold2552: 20491-20990 Capsella grandiflora
Cagra.2552s0007 1.0kb upstream 1.0kb upstream 3131 true Scaffold2552: 20991-24121 Capsella grandiflora
Cagra.2552s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold2552: 23122-24121 Capsella grandiflora
Cagra.2552s0007 1.0kb downstream 1.0kb downstream 3131 true Scaffold2552: 19991-23121 Capsella grandiflora
Cagra.2552s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold2552: 19991-20990 Capsella grandiflora
Cagra.2552s0007 2.0kb upstream 2.0kb upstream 4131 true Scaffold2552: 20991-25121 Capsella grandiflora
Cagra.2552s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold2552: 23122-25121 Capsella grandiflora
Cagra.2552s0007 2.0kb downstream 2.0kb downstream 4131 true Scaffold2552: 18991-23121 Capsella grandiflora
Cagra.2552s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold2552: 18991-20990 Capsella grandiflora
Cagra.2552s0007 5.0kb upstream 5.0kb upstream 7131 true Scaffold2552: 20991-28121 Capsella grandiflora
Cagra.2552s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold2552: 23122-28121 Capsella grandiflora
Cagra.2552s0007 5.0kb downstream 5.0kb downstream 7131 true Scaffold2552: 15991-23121 Capsella grandiflora
Cagra.2552s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold2552: 15991-20990 Capsella grandiflora
Cagra.2552s0007 10.0kb upstream 10.0kb upstream 12131 true Scaffold2552: 20991-33121 Capsella grandiflora
Cagra.2552s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold2552: 23122-33121 Capsella grandiflora
Cagra.2552s0007 10.0kb downstream 10.0kb downstream 12131 true Scaffold2552: 10991-23121 Capsella grandiflora
Cagra.2552s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold2552: 10991-20990 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122337575 5261 Brassicaceae View MSA
123838034 5264 Brassicales-Malvales View MSA
124337231 5266 SBM View MSA
124243280 5268 Malvidae View MSA
124062707 5270 Rosid View MSA
123737615 5271 Pentapetalae View MSA
122790941 5272 Eudicot View MSA
122043250 5273 Angiosperm View MSA
121345223 5274 Embryophyte View MSA
123424727 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain