Gene : Cagra.3375s0001 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12161:SF21 - REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  1
Name:  ? Cagra.3375s0001 Secondary Identifier:  ? PAC:28898589
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3375s0001 0.5kb upstream 0.5kb upstream 3331 true Scaffold3375: 8117-11447 Capsella grandiflora
Cagra.3375s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold3375: 8117-8616 Capsella grandiflora
Cagra.3375s0001 0.5kb downstream 0.5kb downstream 3331 true Scaffold3375: 8617-11947 Capsella grandiflora
Cagra.3375s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold3375: 11448-11947 Capsella grandiflora
Cagra.3375s0001 1.0kb upstream 1.0kb upstream 3831 true Scaffold3375: 7617-11447 Capsella grandiflora
Cagra.3375s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold3375: 7617-8616 Capsella grandiflora
Cagra.3375s0001 1.0kb downstream 1.0kb downstream 3831 true Scaffold3375: 8617-12447 Capsella grandiflora
Cagra.3375s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold3375: 11448-12447 Capsella grandiflora
Cagra.3375s0001 2.0kb upstream 2.0kb upstream 4831 true Scaffold3375: 6617-11447 Capsella grandiflora
Cagra.3375s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold3375: 6617-8616 Capsella grandiflora
Cagra.3375s0001 2.0kb downstream 2.0kb downstream 4831 true Scaffold3375: 8617-13447 Capsella grandiflora
Cagra.3375s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold3375: 11448-13447 Capsella grandiflora
Cagra.3375s0001 5.0kb upstream 5.0kb upstream 7831 true Scaffold3375: 3617-11447 Capsella grandiflora
Cagra.3375s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold3375: 3617-8616 Capsella grandiflora
Cagra.3375s0001 5.0kb downstream 5.0kb downstream 7831 true Scaffold3375: 8617-16447 Capsella grandiflora
Cagra.3375s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold3375: 11448-16447 Capsella grandiflora
Cagra.3375s0001 10.0kb upstream 10.0kb upstream 11447 true Scaffold3375: 1-11447 Capsella grandiflora
Cagra.3375s0001 10.0kb upstream 10.0kb upstream 8616 false Scaffold3375: 1-8616 Capsella grandiflora
Cagra.3375s0001 10.0kb downstream 10.0kb downstream 12831 true Scaffold3375: 8617-21447 Capsella grandiflora
Cagra.3375s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold3375: 11448-21447 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366056 5261 Brassicaceae View MSA
123840797 5264 Brassicales-Malvales View MSA
124337965 5266 SBM View MSA
124245103 5268 Malvidae View MSA
124068076 5270 Rosid View MSA
123736868 5271 Pentapetalae View MSA
122789571 5272 Eudicot View MSA
122045314 5273 Angiosperm View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain