Gene : Cagra.3375s0005 C. grandiflora v1.1
Defline:  (1 of 2) PTHR15131 - SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1 Genomic Order:  5
Name:  ? Cagra.3375s0005 Secondary Identifier:  ? PAC:28898593
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3375s0005 0.5kb upstream 0.5kb upstream 2722 true Scaffold3375: 22915-25636 Capsella grandiflora
Cagra.3375s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold3375: 22915-23414 Capsella grandiflora
Cagra.3375s0005 0.5kb downstream 0.5kb downstream 2722 true Scaffold3375: 23415-26136 Capsella grandiflora
Cagra.3375s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold3375: 25637-26136 Capsella grandiflora
Cagra.3375s0005 1.0kb upstream 1.0kb upstream 3222 true Scaffold3375: 22415-25636 Capsella grandiflora
Cagra.3375s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold3375: 22415-23414 Capsella grandiflora
Cagra.3375s0005 1.0kb downstream 1.0kb downstream 3222 true Scaffold3375: 23415-26636 Capsella grandiflora
Cagra.3375s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold3375: 25637-26636 Capsella grandiflora
Cagra.3375s0005 2.0kb upstream 2.0kb upstream 4222 true Scaffold3375: 21415-25636 Capsella grandiflora
Cagra.3375s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold3375: 21415-23414 Capsella grandiflora
Cagra.3375s0005 2.0kb downstream 2.0kb downstream 4222 true Scaffold3375: 23415-27636 Capsella grandiflora
Cagra.3375s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold3375: 25637-27636 Capsella grandiflora
Cagra.3375s0005 5.0kb upstream 5.0kb upstream 7222 true Scaffold3375: 18415-25636 Capsella grandiflora
Cagra.3375s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold3375: 18415-23414 Capsella grandiflora
Cagra.3375s0005 5.0kb downstream 5.0kb downstream 7222 true Scaffold3375: 23415-30636 Capsella grandiflora
Cagra.3375s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold3375: 25637-30636 Capsella grandiflora
Cagra.3375s0005 10.0kb upstream 10.0kb upstream 12222 true Scaffold3375: 13415-25636 Capsella grandiflora
Cagra.3375s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold3375: 13415-23414 Capsella grandiflora
Cagra.3375s0005 10.0kb downstream 10.0kb downstream 12222 true Scaffold3375: 23415-35636 Capsella grandiflora
Cagra.3375s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold3375: 25637-35636 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366968 5261 Brassicaceae View MSA
123833174 5264 Brassicales-Malvales View MSA
124345261 5266 SBM View MSA
124249790 5268 Malvidae View MSA
124060521 5270 Rosid View MSA
123737660 5271 Pentapetalae View MSA
122797190 5272 Eudicot View MSA
122043179 5273 Angiosperm View MSA
121344742 5274 Embryophyte View MSA
123426038 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain