Gene : Cagra.3392s0004 C. grandiflora v1.1
Defline:  (1 of 5) PTHR12608 - TRANSMEMBRANE PROTEIN HTP-1 RELATED Genomic Order:  4
Name:  ? Cagra.3392s0004 Secondary Identifier:  ? PAC:28897987
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3392s0004 0.5kb upstream 0.5kb upstream 3148 true Scaffold3392: 16642-19789 Capsella grandiflora
Cagra.3392s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold3392: 19290-19789 Capsella grandiflora
Cagra.3392s0004 0.5kb downstream 0.5kb downstream 3148 true Scaffold3392: 16142-19289 Capsella grandiflora
Cagra.3392s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold3392: 16142-16641 Capsella grandiflora
Cagra.3392s0004 1.0kb upstream 1.0kb upstream 3648 true Scaffold3392: 16642-20289 Capsella grandiflora
Cagra.3392s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold3392: 19290-20289 Capsella grandiflora
Cagra.3392s0004 1.0kb downstream 1.0kb downstream 3648 true Scaffold3392: 15642-19289 Capsella grandiflora
Cagra.3392s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold3392: 15642-16641 Capsella grandiflora
Cagra.3392s0004 2.0kb upstream 2.0kb upstream 4648 true Scaffold3392: 16642-21289 Capsella grandiflora
Cagra.3392s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold3392: 19290-21289 Capsella grandiflora
Cagra.3392s0004 2.0kb downstream 2.0kb downstream 4648 true Scaffold3392: 14642-19289 Capsella grandiflora
Cagra.3392s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold3392: 14642-16641 Capsella grandiflora
Cagra.3392s0004 5.0kb upstream 5.0kb upstream 7648 true Scaffold3392: 16642-24289 Capsella grandiflora
Cagra.3392s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold3392: 19290-24289 Capsella grandiflora
Cagra.3392s0004 5.0kb downstream 5.0kb downstream 7648 true Scaffold3392: 11642-19289 Capsella grandiflora
Cagra.3392s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold3392: 11642-16641 Capsella grandiflora
Cagra.3392s0004 10.0kb upstream 10.0kb upstream 12648 true Scaffold3392: 16642-29289 Capsella grandiflora
Cagra.3392s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold3392: 19290-29289 Capsella grandiflora
Cagra.3392s0004 10.0kb downstream 10.0kb downstream 12648 true Scaffold3392: 6642-19289 Capsella grandiflora
Cagra.3392s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold3392: 6642-16641 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377119 5261 Brassicaceae View MSA
123832499 5264 Brassicales-Malvales View MSA
124345020 5266 SBM View MSA
124245050 5268 Malvidae View MSA
124060465 5270 Rosid View MSA
123745262 5271 Pentapetalae View MSA
122786171 5272 Eudicot View MSA
122046225 5273 Angiosperm View MSA
121344721 5274 Embryophyte View MSA
123428725 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain