Gene : Cagra.3392s0011 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31561:SF5 - 3-KETOACYL-COA SYNTHASE 5-RELATED Genomic Order:  11
Name:  ? Cagra.3392s0011 Secondary Identifier:  ? PAC:28897984
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5080 Capsella grandiflora pathologic  
Cgrandiflora PWY-6433 Capsella grandiflora pathologic  
Cgrandiflora PWY-6598 Capsella grandiflora pathologic  
Cgrandiflora PWY-7036 Capsella grandiflora pathologic  
Cgrandiflora PWY-7601 Capsella grandiflora pathologic  
Cgrandiflora PWY-7619 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3392s0011 0.5kb upstream 0.5kb upstream 2306 true Scaffold3392: 42062-44367 Capsella grandiflora
Cagra.3392s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold3392: 42062-42561 Capsella grandiflora
Cagra.3392s0011 0.5kb downstream 0.5kb downstream 2306 true Scaffold3392: 42562-44867 Capsella grandiflora
Cagra.3392s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold3392: 44368-44867 Capsella grandiflora
Cagra.3392s0011 1.0kb upstream 1.0kb upstream 2806 true Scaffold3392: 41562-44367 Capsella grandiflora
Cagra.3392s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold3392: 41562-42561 Capsella grandiflora
Cagra.3392s0011 1.0kb downstream 1.0kb downstream 2806 true Scaffold3392: 42562-45367 Capsella grandiflora
Cagra.3392s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold3392: 44368-45367 Capsella grandiflora
Cagra.3392s0011 2.0kb upstream 2.0kb upstream 3806 true Scaffold3392: 40562-44367 Capsella grandiflora
Cagra.3392s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold3392: 40562-42561 Capsella grandiflora
Cagra.3392s0011 2.0kb downstream 2.0kb downstream 3806 true Scaffold3392: 42562-46367 Capsella grandiflora
Cagra.3392s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold3392: 44368-46367 Capsella grandiflora
Cagra.3392s0011 5.0kb upstream 5.0kb upstream 6806 true Scaffold3392: 37562-44367 Capsella grandiflora
Cagra.3392s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold3392: 37562-42561 Capsella grandiflora
Cagra.3392s0011 5.0kb downstream 5.0kb downstream 6806 true Scaffold3392: 42562-49367 Capsella grandiflora
Cagra.3392s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold3392: 44368-49367 Capsella grandiflora
Cagra.3392s0011 10.0kb upstream 10.0kb upstream 11806 true Scaffold3392: 32562-44367 Capsella grandiflora
Cagra.3392s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold3392: 32562-42561 Capsella grandiflora
Cagra.3392s0011 10.0kb downstream 10.0kb downstream 11806 true Scaffold3392: 42562-54367 Capsella grandiflora
Cagra.3392s0011 10.0kb downstream 10.0kb downstream 10000 false Scaffold3392: 44368-54367 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380577 5261 Brassicaceae View MSA
123802796 5264 Brassicales-Malvales View MSA
124299962 5266 SBM View MSA
124247934 5268 Malvidae View MSA
124074382 5270 Rosid View MSA
123744253 5271 Pentapetalae View MSA
122788881 5272 Eudicot View MSA
122042493 5273 Angiosperm View MSA
121309978 5274 Embryophyte View MSA
123347592 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain