Gene : Cagra.3356s0089 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31500:SF17 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN Genomic Order:  89
Name:  ? Cagra.3356s0089 Secondary Identifier:  ? PAC:28898166
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3356s0089 0.5kb upstream 0.5kb upstream 2491 true Scaffold3356: 358911-361401 Capsella grandiflora
Cagra.3356s0089 0.5kb upstream 0.5kb upstream 500 false Scaffold3356: 360902-361401 Capsella grandiflora
Cagra.3356s0089 0.5kb downstream 0.5kb downstream 2491 true Scaffold3356: 358411-360901 Capsella grandiflora
Cagra.3356s0089 0.5kb downstream 0.5kb downstream 500 false Scaffold3356: 358411-358910 Capsella grandiflora
Cagra.3356s0089 1.0kb upstream 1.0kb upstream 2991 true Scaffold3356: 358911-361901 Capsella grandiflora
Cagra.3356s0089 1.0kb upstream 1.0kb upstream 1000 false Scaffold3356: 360902-361901 Capsella grandiflora
Cagra.3356s0089 1.0kb downstream 1.0kb downstream 2991 true Scaffold3356: 357911-360901 Capsella grandiflora
Cagra.3356s0089 1.0kb downstream 1.0kb downstream 1000 false Scaffold3356: 357911-358910 Capsella grandiflora
Cagra.3356s0089 2.0kb upstream 2.0kb upstream 3991 true Scaffold3356: 358911-362901 Capsella grandiflora
Cagra.3356s0089 2.0kb upstream 2.0kb upstream 2000 false Scaffold3356: 360902-362901 Capsella grandiflora
Cagra.3356s0089 2.0kb downstream 2.0kb downstream 3991 true Scaffold3356: 356911-360901 Capsella grandiflora
Cagra.3356s0089 2.0kb downstream 2.0kb downstream 2000 false Scaffold3356: 356911-358910 Capsella grandiflora
Cagra.3356s0089 5.0kb upstream 5.0kb upstream 6991 true Scaffold3356: 358911-365901 Capsella grandiflora
Cagra.3356s0089 5.0kb upstream 5.0kb upstream 5000 false Scaffold3356: 360902-365901 Capsella grandiflora
Cagra.3356s0089 5.0kb downstream 5.0kb downstream 6991 true Scaffold3356: 353911-360901 Capsella grandiflora
Cagra.3356s0089 5.0kb downstream 5.0kb downstream 5000 false Scaffold3356: 353911-358910 Capsella grandiflora
Cagra.3356s0089 10.0kb upstream 10.0kb upstream 11991 true Scaffold3356: 358911-370901 Capsella grandiflora
Cagra.3356s0089 10.0kb upstream 10.0kb upstream 10000 false Scaffold3356: 360902-370901 Capsella grandiflora
Cagra.3356s0089 10.0kb downstream 10.0kb downstream 11991 true Scaffold3356: 348911-360901 Capsella grandiflora
Cagra.3356s0089 10.0kb downstream 10.0kb downstream 10000 false Scaffold3356: 348911-358910 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364389 5261 Brassicaceae View MSA
123839060 5264 Brassicales-Malvales View MSA
124346948 5266 SBM View MSA
124250687 5268 Malvidae View MSA
124064410 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain