Gene : Cagra.3339s0001 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11680:SF7 - SERINE HYDROXYMETHYLTRANSFERASE 6-RELATED Genomic Order:  1
Name:  ? Cagra.3339s0001 Secondary Identifier:  ? PAC:28905668
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLYSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-2161 Capsella grandiflora pathologic  
Cgrandiflora PWY-3841 Capsella grandiflora pathologic  
Cgrandiflora SER-GLYSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3339s0001 0.5kb upstream 0.5kb upstream 2900 true Scaffold3339: 245-3144 Capsella grandiflora
Cagra.3339s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold3339: 2645-3144 Capsella grandiflora
Cagra.3339s0001 0.5kb downstream 0.5kb downstream 2644 true Scaffold3339: 1-2644 Capsella grandiflora
Cagra.3339s0001 0.5kb downstream 0.5kb downstream 244 false Scaffold3339: 1-244 Capsella grandiflora
Cagra.3339s0001 1.0kb upstream 1.0kb upstream 3400 true Scaffold3339: 245-3644 Capsella grandiflora
Cagra.3339s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold3339: 2645-3644 Capsella grandiflora
Cagra.3339s0001 1.0kb downstream 1.0kb downstream 2644 true Scaffold3339: 1-2644 Capsella grandiflora
Cagra.3339s0001 1.0kb downstream 1.0kb downstream 244 false Scaffold3339: 1-244 Capsella grandiflora
Cagra.3339s0001 2.0kb upstream 2.0kb upstream 4400 true Scaffold3339: 245-4644 Capsella grandiflora
Cagra.3339s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold3339: 2645-4644 Capsella grandiflora
Cagra.3339s0001 2.0kb downstream 2.0kb downstream 2644 true Scaffold3339: 1-2644 Capsella grandiflora
Cagra.3339s0001 2.0kb downstream 2.0kb downstream 244 false Scaffold3339: 1-244 Capsella grandiflora
Cagra.3339s0001 5.0kb upstream 5.0kb upstream 7400 true Scaffold3339: 245-7644 Capsella grandiflora
Cagra.3339s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold3339: 2645-7644 Capsella grandiflora
Cagra.3339s0001 5.0kb downstream 5.0kb downstream 2644 true Scaffold3339: 1-2644 Capsella grandiflora
Cagra.3339s0001 5.0kb downstream 5.0kb downstream 244 false Scaffold3339: 1-244 Capsella grandiflora
Cagra.3339s0001 10.0kb upstream 10.0kb upstream 10487 true Scaffold3339: 245-10731 Capsella grandiflora
Cagra.3339s0001 10.0kb upstream 10.0kb upstream 8087 false Scaffold3339: 2645-10731 Capsella grandiflora
Cagra.3339s0001 10.0kb downstream 10.0kb downstream 2644 true Scaffold3339: 1-2644 Capsella grandiflora
Cagra.3339s0001 10.0kb downstream 10.0kb downstream 244 false Scaffold3339: 1-244 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374952 5261 Brassicaceae View MSA
123838669 5264 Brassicales-Malvales View MSA
124343045 5266 SBM View MSA
124253011 5268 Malvidae View MSA
124069560 5270 Rosid View MSA
123741866 5271 Pentapetalae View MSA
122787051 5272 Eudicot View MSA
122046261 5273 Angiosperm View MSA
121345900 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain