Gene : Cagra.3138s0010 C. grandiflora v1.1
Defline:  (1 of 6) PF00314//PF07714 - Thaumatin family (Thaumatin) // Protein tyrosine kinase (Pkinase_Tyr) Genomic Order:  10
Name:  ? Cagra.3138s0010 Secondary Identifier:  ? PAC:28897621
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7409 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3138s0010 0.5kb upstream 0.5kb upstream 11614 true Scaffold3138: 33586-45199 Capsella grandiflora
Cagra.3138s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold3138: 44700-45199 Capsella grandiflora
Cagra.3138s0010 0.5kb downstream 0.5kb downstream 11614 true Scaffold3138: 33086-44699 Capsella grandiflora
Cagra.3138s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold3138: 33086-33585 Capsella grandiflora
Cagra.3138s0010 1.0kb upstream 1.0kb upstream 12114 true Scaffold3138: 33586-45699 Capsella grandiflora
Cagra.3138s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold3138: 44700-45699 Capsella grandiflora
Cagra.3138s0010 1.0kb downstream 1.0kb downstream 12114 true Scaffold3138: 32586-44699 Capsella grandiflora
Cagra.3138s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold3138: 32586-33585 Capsella grandiflora
Cagra.3138s0010 2.0kb upstream 2.0kb upstream 13114 true Scaffold3138: 33586-46699 Capsella grandiflora
Cagra.3138s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold3138: 44700-46699 Capsella grandiflora
Cagra.3138s0010 2.0kb downstream 2.0kb downstream 13114 true Scaffold3138: 31586-44699 Capsella grandiflora
Cagra.3138s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold3138: 31586-33585 Capsella grandiflora
Cagra.3138s0010 5.0kb upstream 5.0kb upstream 16114 true Scaffold3138: 33586-49699 Capsella grandiflora
Cagra.3138s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold3138: 44700-49699 Capsella grandiflora
Cagra.3138s0010 5.0kb downstream 5.0kb downstream 16114 true Scaffold3138: 28586-44699 Capsella grandiflora
Cagra.3138s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold3138: 28586-33585 Capsella grandiflora
Cagra.3138s0010 10.0kb upstream 10.0kb upstream 18949 true Scaffold3138: 33586-52534 Capsella grandiflora
Cagra.3138s0010 10.0kb upstream 10.0kb upstream 7835 false Scaffold3138: 44700-52534 Capsella grandiflora
Cagra.3138s0010 10.0kb downstream 10.0kb downstream 21114 true Scaffold3138: 23586-44699 Capsella grandiflora
Cagra.3138s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold3138: 23586-33585 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381708 5261 Brassicaceae View MSA
123841678 5264 Brassicales-Malvales View MSA
124350842 5266 SBM View MSA
124254633 5268 Malvidae View MSA
124074937 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain