Gene : Cagra.3217s0008 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11879//PTHR11879:SF18 - ASPARTATE AMINOTRANSFERASE Genomic Order:  8
Name:  ? Cagra.3217s0008 Secondary Identifier:  ? PAC:28908310
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora ASPARTATE-DEG1-PWY Capsella grandiflora pathologic  
Cgrandiflora ASPARTATESYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3001 Capsella grandiflora pathologic  
Cgrandiflora PWY-7115 Capsella grandiflora pathologic  
Cgrandiflora PWY-7117 Capsella grandiflora pathologic  
Cgrandiflora THRESYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3217s0008 0.5kb upstream 0.5kb upstream 3761 true Scaffold3217: 31746-35506 Capsella grandiflora
Cagra.3217s0008 0.5kb upstream 0.5kb upstream 500 false Scaffold3217: 35007-35506 Capsella grandiflora
Cagra.3217s0008 0.5kb downstream 0.5kb downstream 3761 true Scaffold3217: 31246-35006 Capsella grandiflora
Cagra.3217s0008 0.5kb downstream 0.5kb downstream 500 false Scaffold3217: 31246-31745 Capsella grandiflora
Cagra.3217s0008 1.0kb upstream 1.0kb upstream 4261 true Scaffold3217: 31746-36006 Capsella grandiflora
Cagra.3217s0008 1.0kb upstream 1.0kb upstream 1000 false Scaffold3217: 35007-36006 Capsella grandiflora
Cagra.3217s0008 1.0kb downstream 1.0kb downstream 4261 true Scaffold3217: 30746-35006 Capsella grandiflora
Cagra.3217s0008 1.0kb downstream 1.0kb downstream 1000 false Scaffold3217: 30746-31745 Capsella grandiflora
Cagra.3217s0008 2.0kb upstream 2.0kb upstream 5261 true Scaffold3217: 31746-37006 Capsella grandiflora
Cagra.3217s0008 2.0kb upstream 2.0kb upstream 2000 false Scaffold3217: 35007-37006 Capsella grandiflora
Cagra.3217s0008 2.0kb downstream 2.0kb downstream 5261 true Scaffold3217: 29746-35006 Capsella grandiflora
Cagra.3217s0008 2.0kb downstream 2.0kb downstream 2000 false Scaffold3217: 29746-31745 Capsella grandiflora
Cagra.3217s0008 5.0kb upstream 5.0kb upstream 8261 true Scaffold3217: 31746-40006 Capsella grandiflora
Cagra.3217s0008 5.0kb upstream 5.0kb upstream 5000 false Scaffold3217: 35007-40006 Capsella grandiflora
Cagra.3217s0008 5.0kb downstream 5.0kb downstream 8261 true Scaffold3217: 26746-35006 Capsella grandiflora
Cagra.3217s0008 5.0kb downstream 5.0kb downstream 5000 false Scaffold3217: 26746-31745 Capsella grandiflora
Cagra.3217s0008 10.0kb upstream 10.0kb upstream 13261 true Scaffold3217: 31746-45006 Capsella grandiflora
Cagra.3217s0008 10.0kb upstream 10.0kb upstream 10000 false Scaffold3217: 35007-45006 Capsella grandiflora
Cagra.3217s0008 10.0kb downstream 10.0kb downstream 13261 true Scaffold3217: 21746-35006 Capsella grandiflora
Cagra.3217s0008 10.0kb downstream 10.0kb downstream 10000 false Scaffold3217: 21746-31745 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368520 5261 Brassicaceae View MSA
123839385 5264 Brassicales-Malvales View MSA
124344803 5266 SBM View MSA
124241659 5268 Malvidae View MSA
124063482 5270 Rosid View MSA
123737145 5271 Pentapetalae View MSA
122793092 5272 Eudicot View MSA
122046072 5273 Angiosperm View MSA
121344214 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain