Gene : Cagra.3217s0010 C. grandiflora v1.1
Defline:  (1 of 2) PTHR23076//PTHR23076:SF60 - METALLOPROTEASE M41 FTSH Genomic Order:  10
Name:  ? Cagra.3217s0010 Secondary Identifier:  ? PAC:28908312
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3217s0010 0.5kb upstream 0.5kb upstream 3005 true Scaffold3217: 37481-40485 Capsella grandiflora
Cagra.3217s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold3217: 39986-40485 Capsella grandiflora
Cagra.3217s0010 0.5kb downstream 0.5kb downstream 3005 true Scaffold3217: 36981-39985 Capsella grandiflora
Cagra.3217s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold3217: 36981-37480 Capsella grandiflora
Cagra.3217s0010 1.0kb upstream 1.0kb upstream 3505 true Scaffold3217: 37481-40985 Capsella grandiflora
Cagra.3217s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold3217: 39986-40985 Capsella grandiflora
Cagra.3217s0010 1.0kb downstream 1.0kb downstream 3505 true Scaffold3217: 36481-39985 Capsella grandiflora
Cagra.3217s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold3217: 36481-37480 Capsella grandiflora
Cagra.3217s0010 2.0kb upstream 2.0kb upstream 4505 true Scaffold3217: 37481-41985 Capsella grandiflora
Cagra.3217s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold3217: 39986-41985 Capsella grandiflora
Cagra.3217s0010 2.0kb downstream 2.0kb downstream 4505 true Scaffold3217: 35481-39985 Capsella grandiflora
Cagra.3217s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold3217: 35481-37480 Capsella grandiflora
Cagra.3217s0010 5.0kb upstream 5.0kb upstream 7505 true Scaffold3217: 37481-44985 Capsella grandiflora
Cagra.3217s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold3217: 39986-44985 Capsella grandiflora
Cagra.3217s0010 5.0kb downstream 5.0kb downstream 7505 true Scaffold3217: 32481-39985 Capsella grandiflora
Cagra.3217s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold3217: 32481-37480 Capsella grandiflora
Cagra.3217s0010 10.0kb upstream 10.0kb upstream 12505 true Scaffold3217: 37481-49985 Capsella grandiflora
Cagra.3217s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold3217: 39986-49985 Capsella grandiflora
Cagra.3217s0010 10.0kb downstream 10.0kb downstream 12505 true Scaffold3217: 27481-39985 Capsella grandiflora
Cagra.3217s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold3217: 27481-37480 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374340 5261 Brassicaceae View MSA
123839956 5264 Brassicales-Malvales View MSA
124341395 5266 SBM View MSA
124239029 5268 Malvidae View MSA
124067047 5270 Rosid View MSA
123736542 5271 Pentapetalae View MSA
122790199 5272 Eudicot View MSA
122046550 5273 Angiosperm View MSA
121351325 5274 Embryophyte View MSA
123426403 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain