Gene : Cagra.3055s0016 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11592//PTHR11592:SF42 - GLUTATHIONE PEROXIDASE Genomic Order:  16
Name:  ? Cagra.3055s0016 Secondary Identifier:  ? PAC:28896875
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-4081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3055s0016 0.5kb upstream 0.5kb upstream 2043 true Scaffold3055: 48736-50778 Capsella grandiflora
Cagra.3055s0016 0.5kb upstream 0.5kb upstream 500 false Scaffold3055: 50279-50778 Capsella grandiflora
Cagra.3055s0016 0.5kb downstream 0.5kb downstream 2043 true Scaffold3055: 48236-50278 Capsella grandiflora
Cagra.3055s0016 0.5kb downstream 0.5kb downstream 500 false Scaffold3055: 48236-48735 Capsella grandiflora
Cagra.3055s0016 1.0kb upstream 1.0kb upstream 2543 true Scaffold3055: 48736-51278 Capsella grandiflora
Cagra.3055s0016 1.0kb upstream 1.0kb upstream 1000 false Scaffold3055: 50279-51278 Capsella grandiflora
Cagra.3055s0016 1.0kb downstream 1.0kb downstream 2543 true Scaffold3055: 47736-50278 Capsella grandiflora
Cagra.3055s0016 1.0kb downstream 1.0kb downstream 1000 false Scaffold3055: 47736-48735 Capsella grandiflora
Cagra.3055s0016 2.0kb upstream 2.0kb upstream 3543 true Scaffold3055: 48736-52278 Capsella grandiflora
Cagra.3055s0016 2.0kb upstream 2.0kb upstream 2000 false Scaffold3055: 50279-52278 Capsella grandiflora
Cagra.3055s0016 2.0kb downstream 2.0kb downstream 3543 true Scaffold3055: 46736-50278 Capsella grandiflora
Cagra.3055s0016 2.0kb downstream 2.0kb downstream 2000 false Scaffold3055: 46736-48735 Capsella grandiflora
Cagra.3055s0016 5.0kb upstream 5.0kb upstream 6543 true Scaffold3055: 48736-55278 Capsella grandiflora
Cagra.3055s0016 5.0kb upstream 5.0kb upstream 5000 false Scaffold3055: 50279-55278 Capsella grandiflora
Cagra.3055s0016 5.0kb downstream 5.0kb downstream 6543 true Scaffold3055: 43736-50278 Capsella grandiflora
Cagra.3055s0016 5.0kb downstream 5.0kb downstream 5000 false Scaffold3055: 43736-48735 Capsella grandiflora
Cagra.3055s0016 10.0kb upstream 10.0kb upstream 6914 true Scaffold3055: 48736-55649 Capsella grandiflora
Cagra.3055s0016 10.0kb upstream 10.0kb upstream 5371 false Scaffold3055: 50279-55649 Capsella grandiflora
Cagra.3055s0016 10.0kb downstream 10.0kb downstream 11543 true Scaffold3055: 38736-50278 Capsella grandiflora
Cagra.3055s0016 10.0kb downstream 10.0kb downstream 10000 false Scaffold3055: 38736-48735 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122382062 5261 Brassicaceae View MSA
123838420 5264 Brassicales-Malvales View MSA
124336450 5266 SBM View MSA
124242823 5268 Malvidae View MSA
124066443 5270 Rosid View MSA
123752336 5271 Pentapetalae View MSA
122792727 5272 Eudicot View MSA
122049273 5273 Angiosperm View MSA
121349724 5274 Embryophyte View MSA
123426849 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain