Gene : Cagra.3125s0004 C. grandiflora v1.1
Defline:  (1 of 8) PTHR12411:SF333 - CYSTEINE PROTEASE-LIKE PROTEIN-RELATED Genomic Order:  4
Name:  ? Cagra.3125s0004 Secondary Identifier:  ? PAC:28919490
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3125s0004 0.5kb upstream 0.5kb upstream 1833 true Scaffold3125: 15268-17100 Capsella grandiflora
Cagra.3125s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold3125: 15268-15767 Capsella grandiflora
Cagra.3125s0004 0.5kb downstream 0.5kb downstream 1833 true Scaffold3125: 15768-17600 Capsella grandiflora
Cagra.3125s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold3125: 17101-17600 Capsella grandiflora
Cagra.3125s0004 1.0kb upstream 1.0kb upstream 2333 true Scaffold3125: 14768-17100 Capsella grandiflora
Cagra.3125s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold3125: 14768-15767 Capsella grandiflora
Cagra.3125s0004 1.0kb downstream 1.0kb downstream 2333 true Scaffold3125: 15768-18100 Capsella grandiflora
Cagra.3125s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold3125: 17101-18100 Capsella grandiflora
Cagra.3125s0004 2.0kb upstream 2.0kb upstream 3333 true Scaffold3125: 13768-17100 Capsella grandiflora
Cagra.3125s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold3125: 13768-15767 Capsella grandiflora
Cagra.3125s0004 2.0kb downstream 2.0kb downstream 3333 true Scaffold3125: 15768-19100 Capsella grandiflora
Cagra.3125s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold3125: 17101-19100 Capsella grandiflora
Cagra.3125s0004 5.0kb upstream 5.0kb upstream 6333 true Scaffold3125: 10768-17100 Capsella grandiflora
Cagra.3125s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold3125: 10768-15767 Capsella grandiflora
Cagra.3125s0004 5.0kb downstream 5.0kb downstream 6333 true Scaffold3125: 15768-22100 Capsella grandiflora
Cagra.3125s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold3125: 17101-22100 Capsella grandiflora
Cagra.3125s0004 10.0kb upstream 10.0kb upstream 11333 true Scaffold3125: 5768-17100 Capsella grandiflora
Cagra.3125s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold3125: 5768-15767 Capsella grandiflora
Cagra.3125s0004 10.0kb downstream 10.0kb downstream 11333 true Scaffold3125: 15768-27100 Capsella grandiflora
Cagra.3125s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold3125: 17101-27100 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381678 5261 Brassicaceae View MSA
123841573 5264 Brassicales-Malvales View MSA
124341900 5266 SBM View MSA
124254446 5268 Malvidae View MSA
124074647 5270 Rosid View MSA
123752467 5271 Pentapetalae View MSA
122797682 5272 Eudicot View MSA
122051193 5273 Angiosperm View MSA
121348840 5274 Embryophyte View MSA
123426788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain