Gene : Cagra.3166s0012 C. grandiflora v1.1

Defline:  (1 of 5) 2.7.2.4 - Aspartate kinase / Aspartokinase Genomic Order:  12
Name:  ? Cagra.3166s0012 Secondary Identifier:  ? PAC:28899779

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora HOMOSERSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3001 Capsella grandiflora pathologic  
Cgrandiflora PWY-5097 Capsella grandiflora pathologic  
Cgrandiflora PWY-724 Capsella grandiflora pathologic  
Cgrandiflora THRESYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3166s0012 0.5kb upstream 0.5kb upstream 4286 true Scaffold3166: 39005-43290 Capsella grandiflora
Cagra.3166s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold3166: 39005-39504 Capsella grandiflora
Cagra.3166s0012 0.5kb downstream 0.5kb downstream 4286 true Scaffold3166: 39505-43790 Capsella grandiflora
Cagra.3166s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold3166: 43291-43790 Capsella grandiflora
Cagra.3166s0012 1.0kb upstream 1.0kb upstream 4786 true Scaffold3166: 38505-43290 Capsella grandiflora
Cagra.3166s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold3166: 38505-39504 Capsella grandiflora
Cagra.3166s0012 1.0kb downstream 1.0kb downstream 4786 true Scaffold3166: 39505-44290 Capsella grandiflora
Cagra.3166s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold3166: 43291-44290 Capsella grandiflora
Cagra.3166s0012 2.0kb upstream 2.0kb upstream 5786 true Scaffold3166: 37505-43290 Capsella grandiflora
Cagra.3166s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold3166: 37505-39504 Capsella grandiflora
Cagra.3166s0012 2.0kb downstream 2.0kb downstream 5786 true Scaffold3166: 39505-45290 Capsella grandiflora
Cagra.3166s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold3166: 43291-45290 Capsella grandiflora
Cagra.3166s0012 5.0kb upstream 5.0kb upstream 8786 true Scaffold3166: 34505-43290 Capsella grandiflora
Cagra.3166s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold3166: 34505-39504 Capsella grandiflora
Cagra.3166s0012 5.0kb downstream 5.0kb downstream 8786 true Scaffold3166: 39505-48290 Capsella grandiflora
Cagra.3166s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold3166: 43291-48290 Capsella grandiflora
Cagra.3166s0012 10.0kb upstream 10.0kb upstream 13786 true Scaffold3166: 29505-43290 Capsella grandiflora
Cagra.3166s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold3166: 29505-39504 Capsella grandiflora
Cagra.3166s0012 10.0kb downstream 10.0kb downstream 13786 true Scaffold3166: 39505-53290 Capsella grandiflora
Cagra.3166s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold3166: 43291-53290 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364853 5261 Brassicaceae View MSA
123838640 5264 Brassicales-Malvales View MSA
124345377 5266 SBM View MSA
124243128 5268 Malvidae View MSA
124064113 5270 Rosid View MSA
123738935 5271 Pentapetalae View MSA
122796231 5272 Eudicot View MSA
122050797 5273 Angiosperm View MSA
121346150 5274 Embryophyte View MSA
123424787 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain