Gene : Cagra.3166s0020 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31517:SF7 - PEROXIDASE 55 Genomic Order:  20
Name:  ? Cagra.3166s0020 Secondary Identifier:  ? PAC:28899746
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5466 Capsella grandiflora pathologic  
Cgrandiflora PWY-7214 Capsella grandiflora pathologic  
Cgrandiflora PWY-7445 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3166s0020 0.5kb upstream 0.5kb upstream 1843 true Scaffold3166: 63843-65685 Capsella grandiflora
Cagra.3166s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold3166: 65186-65685 Capsella grandiflora
Cagra.3166s0020 0.5kb downstream 0.5kb downstream 1843 true Scaffold3166: 63343-65185 Capsella grandiflora
Cagra.3166s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold3166: 63343-63842 Capsella grandiflora
Cagra.3166s0020 1.0kb upstream 1.0kb upstream 2343 true Scaffold3166: 63843-66185 Capsella grandiflora
Cagra.3166s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold3166: 65186-66185 Capsella grandiflora
Cagra.3166s0020 1.0kb downstream 1.0kb downstream 2343 true Scaffold3166: 62843-65185 Capsella grandiflora
Cagra.3166s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold3166: 62843-63842 Capsella grandiflora
Cagra.3166s0020 2.0kb upstream 2.0kb upstream 3343 true Scaffold3166: 63843-67185 Capsella grandiflora
Cagra.3166s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold3166: 65186-67185 Capsella grandiflora
Cagra.3166s0020 2.0kb downstream 2.0kb downstream 3343 true Scaffold3166: 61843-65185 Capsella grandiflora
Cagra.3166s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold3166: 61843-63842 Capsella grandiflora
Cagra.3166s0020 5.0kb upstream 5.0kb upstream 6343 true Scaffold3166: 63843-70185 Capsella grandiflora
Cagra.3166s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold3166: 65186-70185 Capsella grandiflora
Cagra.3166s0020 5.0kb downstream 5.0kb downstream 6343 true Scaffold3166: 58843-65185 Capsella grandiflora
Cagra.3166s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold3166: 58843-63842 Capsella grandiflora
Cagra.3166s0020 10.0kb upstream 10.0kb upstream 11343 true Scaffold3166: 63843-75185 Capsella grandiflora
Cagra.3166s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold3166: 65186-75185 Capsella grandiflora
Cagra.3166s0020 10.0kb downstream 10.0kb downstream 11343 true Scaffold3166: 53843-65185 Capsella grandiflora
Cagra.3166s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold3166: 53843-63842 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367198 5261 Brassicaceae View MSA
123838119 5264 Brassicales-Malvales View MSA
124338503 5266 SBM View MSA
124244049 5268 Malvidae View MSA
124074838 5270 Rosid View MSA
123752607 5271 Pentapetalae View MSA
122796741 5272 Eudicot View MSA
122051577 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain