Gene : Cagra.3166s0063 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11822:SF5 - ISOCITRATE DEHYDROGENASE [NADP], CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  63
Name:  ? Cagra.3166s0063 Secondary Identifier:  ? PAC:28899782
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6549 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3166s0063 0.5kb upstream 0.5kb upstream 3949 true Scaffold3166: 214285-218233 Capsella grandiflora
Cagra.3166s0063 0.5kb upstream 0.5kb upstream 500 false Scaffold3166: 217734-218233 Capsella grandiflora
Cagra.3166s0063 0.5kb downstream 0.5kb downstream 3949 true Scaffold3166: 213785-217733 Capsella grandiflora
Cagra.3166s0063 0.5kb downstream 0.5kb downstream 500 false Scaffold3166: 213785-214284 Capsella grandiflora
Cagra.3166s0063 1.0kb upstream 1.0kb upstream 4449 true Scaffold3166: 214285-218733 Capsella grandiflora
Cagra.3166s0063 1.0kb upstream 1.0kb upstream 1000 false Scaffold3166: 217734-218733 Capsella grandiflora
Cagra.3166s0063 1.0kb downstream 1.0kb downstream 4449 true Scaffold3166: 213285-217733 Capsella grandiflora
Cagra.3166s0063 1.0kb downstream 1.0kb downstream 1000 false Scaffold3166: 213285-214284 Capsella grandiflora
Cagra.3166s0063 2.0kb upstream 2.0kb upstream 5449 true Scaffold3166: 214285-219733 Capsella grandiflora
Cagra.3166s0063 2.0kb upstream 2.0kb upstream 2000 false Scaffold3166: 217734-219733 Capsella grandiflora
Cagra.3166s0063 2.0kb downstream 2.0kb downstream 5449 true Scaffold3166: 212285-217733 Capsella grandiflora
Cagra.3166s0063 2.0kb downstream 2.0kb downstream 2000 false Scaffold3166: 212285-214284 Capsella grandiflora
Cagra.3166s0063 5.0kb upstream 5.0kb upstream 8449 true Scaffold3166: 214285-222733 Capsella grandiflora
Cagra.3166s0063 5.0kb upstream 5.0kb upstream 5000 false Scaffold3166: 217734-222733 Capsella grandiflora
Cagra.3166s0063 5.0kb downstream 5.0kb downstream 8449 true Scaffold3166: 209285-217733 Capsella grandiflora
Cagra.3166s0063 5.0kb downstream 5.0kb downstream 5000 false Scaffold3166: 209285-214284 Capsella grandiflora
Cagra.3166s0063 10.0kb upstream 10.0kb upstream 13449 true Scaffold3166: 214285-227733 Capsella grandiflora
Cagra.3166s0063 10.0kb upstream 10.0kb upstream 10000 false Scaffold3166: 217734-227733 Capsella grandiflora
Cagra.3166s0063 10.0kb downstream 10.0kb downstream 13449 true Scaffold3166: 204285-217733 Capsella grandiflora
Cagra.3166s0063 10.0kb downstream 10.0kb downstream 10000 false Scaffold3166: 204285-214284 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041513 5273 Angiosperm View MSA
122367342 5261 Brassicaceae View MSA
123829128 5264 Brassicales-Malvales View MSA
124338965 5266 SBM View MSA
124253580 5268 Malvidae View MSA
124066348 5270 Rosid View MSA
123740516 5271 Pentapetalae View MSA
122791819 5272 Eudicot View MSA
121349846 5274 Embryophyte View MSA
123426624 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain