Gene : Cagra.3166s0064 C. grandiflora v1.1
Defline:  (1 of 1) 2.1.1.220 - tRNA (adenine(58)-N(1))-methyltransferase / tRNA m(1)A(58) methyltransferase Genomic Order:  64
Name:  ? Cagra.3166s0064 Secondary Identifier:  ? PAC:28899704
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6829 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3166s0064 0.5kb upstream 0.5kb upstream 2704 true Scaffold3166: 217402-220105 Capsella grandiflora
Cagra.3166s0064 0.5kb upstream 0.5kb upstream 500 false Scaffold3166: 217402-217901 Capsella grandiflora
Cagra.3166s0064 0.5kb downstream 0.5kb downstream 2704 true Scaffold3166: 217902-220605 Capsella grandiflora
Cagra.3166s0064 0.5kb downstream 0.5kb downstream 500 false Scaffold3166: 220106-220605 Capsella grandiflora
Cagra.3166s0064 1.0kb upstream 1.0kb upstream 3204 true Scaffold3166: 216902-220105 Capsella grandiflora
Cagra.3166s0064 1.0kb upstream 1.0kb upstream 1000 false Scaffold3166: 216902-217901 Capsella grandiflora
Cagra.3166s0064 1.0kb downstream 1.0kb downstream 3204 true Scaffold3166: 217902-221105 Capsella grandiflora
Cagra.3166s0064 1.0kb downstream 1.0kb downstream 1000 false Scaffold3166: 220106-221105 Capsella grandiflora
Cagra.3166s0064 2.0kb upstream 2.0kb upstream 4204 true Scaffold3166: 215902-220105 Capsella grandiflora
Cagra.3166s0064 2.0kb upstream 2.0kb upstream 2000 false Scaffold3166: 215902-217901 Capsella grandiflora
Cagra.3166s0064 2.0kb downstream 2.0kb downstream 4204 true Scaffold3166: 217902-222105 Capsella grandiflora
Cagra.3166s0064 2.0kb downstream 2.0kb downstream 2000 false Scaffold3166: 220106-222105 Capsella grandiflora
Cagra.3166s0064 5.0kb upstream 5.0kb upstream 7204 true Scaffold3166: 212902-220105 Capsella grandiflora
Cagra.3166s0064 5.0kb upstream 5.0kb upstream 5000 false Scaffold3166: 212902-217901 Capsella grandiflora
Cagra.3166s0064 5.0kb downstream 5.0kb downstream 7204 true Scaffold3166: 217902-225105 Capsella grandiflora
Cagra.3166s0064 5.0kb downstream 5.0kb downstream 5000 false Scaffold3166: 220106-225105 Capsella grandiflora
Cagra.3166s0064 10.0kb upstream 10.0kb upstream 12204 true Scaffold3166: 207902-220105 Capsella grandiflora
Cagra.3166s0064 10.0kb upstream 10.0kb upstream 10000 false Scaffold3166: 207902-217901 Capsella grandiflora
Cagra.3166s0064 10.0kb downstream 10.0kb downstream 12204 true Scaffold3166: 217902-230105 Capsella grandiflora
Cagra.3166s0064 10.0kb downstream 10.0kb downstream 10000 false Scaffold3166: 220106-230105 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365982 5261 Brassicaceae View MSA
123833915 5264 Brassicales-Malvales View MSA
124342887 5266 SBM View MSA
124239555 5268 Malvidae View MSA
124067339 5270 Rosid View MSA
123740177 5271 Pentapetalae View MSA
122793445 5272 Eudicot View MSA
122045272 5273 Angiosperm View MSA
121345508 5274 Embryophyte View MSA
123423922 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain