Gene : Cagra.2973s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31412:SF0 - ZINC METALLOPROTEASE EGY1, CHLOROPLASTIC-RELATED Genomic Order:  2
Name:  ? Cagra.2973s0002 Secondary Identifier:  ? PAC:28908131
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2973s0002 0.5kb upstream 0.5kb upstream 3095 true Scaffold2973: 6251-9345 Capsella grandiflora
Cagra.2973s0002 0.5kb upstream 0.5kb upstream 2 false Scaffold2973: 9344-9345 Capsella grandiflora
Cagra.2973s0002 0.5kb downstream 0.5kb downstream 3593 true Scaffold2973: 5751-9343 Capsella grandiflora
Cagra.2973s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold2973: 5751-6250 Capsella grandiflora
Cagra.2973s0002 1.0kb upstream 1.0kb upstream 3095 true Scaffold2973: 6251-9345 Capsella grandiflora
Cagra.2973s0002 1.0kb upstream 1.0kb upstream 2 false Scaffold2973: 9344-9345 Capsella grandiflora
Cagra.2973s0002 1.0kb downstream 1.0kb downstream 4093 true Scaffold2973: 5251-9343 Capsella grandiflora
Cagra.2973s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold2973: 5251-6250 Capsella grandiflora
Cagra.2973s0002 2.0kb upstream 2.0kb upstream 3095 true Scaffold2973: 6251-9345 Capsella grandiflora
Cagra.2973s0002 2.0kb upstream 2.0kb upstream 2 false Scaffold2973: 9344-9345 Capsella grandiflora
Cagra.2973s0002 2.0kb downstream 2.0kb downstream 5093 true Scaffold2973: 4251-9343 Capsella grandiflora
Cagra.2973s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold2973: 4251-6250 Capsella grandiflora
Cagra.2973s0002 5.0kb upstream 5.0kb upstream 3095 true Scaffold2973: 6251-9345 Capsella grandiflora
Cagra.2973s0002 5.0kb upstream 5.0kb upstream 2 false Scaffold2973: 9344-9345 Capsella grandiflora
Cagra.2973s0002 5.0kb downstream 5.0kb downstream 8093 true Scaffold2973: 1251-9343 Capsella grandiflora
Cagra.2973s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold2973: 1251-6250 Capsella grandiflora
Cagra.2973s0002 10.0kb upstream 10.0kb upstream 3095 true Scaffold2973: 6251-9345 Capsella grandiflora
Cagra.2973s0002 10.0kb upstream 10.0kb upstream 2 false Scaffold2973: 9344-9345 Capsella grandiflora
Cagra.2973s0002 10.0kb downstream 10.0kb downstream 9343 true Scaffold2973: 1-9343 Capsella grandiflora
Cagra.2973s0002 10.0kb downstream 10.0kb downstream 6250 false Scaffold2973: 1-6250 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378892 5261 Brassicaceae View MSA
123829057 5264 Brassicales-Malvales View MSA
124336675 5266 SBM View MSA
124238129 5268 Malvidae View MSA
124065213 5270 Rosid View MSA
123737712 5271 Pentapetalae View MSA
122791466 5272 Eudicot View MSA
122047981 5273 Angiosperm View MSA
121344636 5274 Embryophyte View MSA
123425233 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain