Gene : Cagra.3005s0003 C. grandiflora v1.1
Defline:  (1 of 2) PTHR24012:SF449 - SPLICING FACTOR 3B SUBUNIT 4 Genomic Order:  3
Name:  ? Cagra.3005s0003 Secondary Identifier:  ? PAC:28908540
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3005s0003 0.5kb upstream 0.5kb upstream 2243 true Scaffold3005: 11713-13955 Capsella grandiflora
Cagra.3005s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold3005: 11713-12212 Capsella grandiflora
Cagra.3005s0003 0.5kb downstream 0.5kb downstream 2243 true Scaffold3005: 12213-14455 Capsella grandiflora
Cagra.3005s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold3005: 13956-14455 Capsella grandiflora
Cagra.3005s0003 1.0kb upstream 1.0kb upstream 2743 true Scaffold3005: 11213-13955 Capsella grandiflora
Cagra.3005s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold3005: 11213-12212 Capsella grandiflora
Cagra.3005s0003 1.0kb downstream 1.0kb downstream 2743 true Scaffold3005: 12213-14955 Capsella grandiflora
Cagra.3005s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold3005: 13956-14955 Capsella grandiflora
Cagra.3005s0003 2.0kb upstream 2.0kb upstream 3743 true Scaffold3005: 10213-13955 Capsella grandiflora
Cagra.3005s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold3005: 10213-12212 Capsella grandiflora
Cagra.3005s0003 2.0kb downstream 2.0kb downstream 2884 true Scaffold3005: 12213-15096 Capsella grandiflora
Cagra.3005s0003 2.0kb downstream 2.0kb downstream 1141 false Scaffold3005: 13956-15096 Capsella grandiflora
Cagra.3005s0003 5.0kb upstream 5.0kb upstream 6743 true Scaffold3005: 7213-13955 Capsella grandiflora
Cagra.3005s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold3005: 7213-12212 Capsella grandiflora
Cagra.3005s0003 5.0kb downstream 5.0kb downstream 2884 true Scaffold3005: 12213-15096 Capsella grandiflora
Cagra.3005s0003 5.0kb downstream 5.0kb downstream 1141 false Scaffold3005: 13956-15096 Capsella grandiflora
Cagra.3005s0003 10.0kb upstream 10.0kb upstream 11743 true Scaffold3005: 2213-13955 Capsella grandiflora
Cagra.3005s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold3005: 2213-12212 Capsella grandiflora
Cagra.3005s0003 10.0kb downstream 10.0kb downstream 2884 true Scaffold3005: 12213-15096 Capsella grandiflora
Cagra.3005s0003 10.0kb downstream 10.0kb downstream 1141 false Scaffold3005: 13956-15096 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364985 5261 Brassicaceae View MSA
123827664 5264 Brassicales-Malvales View MSA
124339244 5266 SBM View MSA
124242604 5268 Malvidae View MSA
124063998 5270 Rosid View MSA
123752165 5271 Pentapetalae View MSA
122797321 5272 Eudicot View MSA
122051122 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349008 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain