Gene : Cagra.3694s0003 C. grandiflora v1.1
Defline:  (1 of 2) 5.3.1.8 - Mannose-6-phosphate isomerase / Phosphomannose isomerase Genomic Order:  3
Name:  ? Cagra.3694s0003 Secondary Identifier:  ? PAC:28908241
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora MANNCAT-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3881 Capsella grandiflora pathologic  
Cgrandiflora PWY-5659 Capsella grandiflora pathologic  
Cgrandiflora PWY-882 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3694s0003 0.5kb upstream 0.5kb upstream 2765 true Scaffold3694: 14386-17150 Capsella grandiflora
Cagra.3694s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold3694: 14386-14885 Capsella grandiflora
Cagra.3694s0003 0.5kb downstream 0.5kb downstream 2765 true Scaffold3694: 14886-17650 Capsella grandiflora
Cagra.3694s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold3694: 17151-17650 Capsella grandiflora
Cagra.3694s0003 1.0kb upstream 1.0kb upstream 3265 true Scaffold3694: 13886-17150 Capsella grandiflora
Cagra.3694s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold3694: 13886-14885 Capsella grandiflora
Cagra.3694s0003 1.0kb downstream 1.0kb downstream 3265 true Scaffold3694: 14886-18150 Capsella grandiflora
Cagra.3694s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold3694: 17151-18150 Capsella grandiflora
Cagra.3694s0003 2.0kb upstream 2.0kb upstream 4265 true Scaffold3694: 12886-17150 Capsella grandiflora
Cagra.3694s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold3694: 12886-14885 Capsella grandiflora
Cagra.3694s0003 2.0kb downstream 2.0kb downstream 4265 true Scaffold3694: 14886-19150 Capsella grandiflora
Cagra.3694s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold3694: 17151-19150 Capsella grandiflora
Cagra.3694s0003 5.0kb upstream 5.0kb upstream 7265 true Scaffold3694: 9886-17150 Capsella grandiflora
Cagra.3694s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold3694: 9886-14885 Capsella grandiflora
Cagra.3694s0003 5.0kb downstream 5.0kb downstream 7265 true Scaffold3694: 14886-22150 Capsella grandiflora
Cagra.3694s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold3694: 17151-22150 Capsella grandiflora
Cagra.3694s0003 10.0kb upstream 10.0kb upstream 12265 true Scaffold3694: 4886-17150 Capsella grandiflora
Cagra.3694s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold3694: 4886-14885 Capsella grandiflora
Cagra.3694s0003 10.0kb downstream 10.0kb downstream 8105 true Scaffold3694: 14886-22990 Capsella grandiflora
Cagra.3694s0003 10.0kb downstream 10.0kb downstream 5840 false Scaffold3694: 17151-22990 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365977 5261 Brassicaceae View MSA
123837185 5264 Brassicales-Malvales View MSA
124340778 5266 SBM View MSA
124247259 5268 Malvidae View MSA
124062698 5270 Rosid View MSA
123747047 5271 Pentapetalae View MSA
122796882 5272 Eudicot View MSA
122046941 5273 Angiosperm View MSA
121350841 5274 Embryophyte View MSA
123423837 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain