Gene : Cagra.3694s0004 C. grandiflora v1.1
Defline:  (1 of 1) 5.3.99.9 - Neoxanthin synthase / NSY Genomic Order:  4
Name:  ? Cagra.3694s0004 Secondary Identifier:  ? PAC:28908244
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6809 Capsella grandiflora pathologic  
Cgrandiflora PWY-695 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3694s0004 0.5kb upstream 0.5kb upstream 2155 true Scaffold3694: 18496-20650 Capsella grandiflora
Cagra.3694s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold3694: 20151-20650 Capsella grandiflora
Cagra.3694s0004 0.5kb downstream 0.5kb downstream 2155 true Scaffold3694: 17996-20150 Capsella grandiflora
Cagra.3694s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold3694: 17996-18495 Capsella grandiflora
Cagra.3694s0004 1.0kb upstream 1.0kb upstream 2655 true Scaffold3694: 18496-21150 Capsella grandiflora
Cagra.3694s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold3694: 20151-21150 Capsella grandiflora
Cagra.3694s0004 1.0kb downstream 1.0kb downstream 2655 true Scaffold3694: 17496-20150 Capsella grandiflora
Cagra.3694s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold3694: 17496-18495 Capsella grandiflora
Cagra.3694s0004 2.0kb upstream 2.0kb upstream 3655 true Scaffold3694: 18496-22150 Capsella grandiflora
Cagra.3694s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold3694: 20151-22150 Capsella grandiflora
Cagra.3694s0004 2.0kb downstream 2.0kb downstream 3655 true Scaffold3694: 16496-20150 Capsella grandiflora
Cagra.3694s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold3694: 16496-18495 Capsella grandiflora
Cagra.3694s0004 5.0kb upstream 5.0kb upstream 4495 true Scaffold3694: 18496-22990 Capsella grandiflora
Cagra.3694s0004 5.0kb upstream 5.0kb upstream 2840 false Scaffold3694: 20151-22990 Capsella grandiflora
Cagra.3694s0004 5.0kb downstream 5.0kb downstream 6655 true Scaffold3694: 13496-20150 Capsella grandiflora
Cagra.3694s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold3694: 13496-18495 Capsella grandiflora
Cagra.3694s0004 10.0kb upstream 10.0kb upstream 4495 true Scaffold3694: 18496-22990 Capsella grandiflora
Cagra.3694s0004 10.0kb upstream 10.0kb upstream 2840 false Scaffold3694: 20151-22990 Capsella grandiflora
Cagra.3694s0004 10.0kb downstream 10.0kb downstream 11655 true Scaffold3694: 8496-20150 Capsella grandiflora
Cagra.3694s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold3694: 8496-18495 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362178 5261 Brassicaceae View MSA
123832925 5264 Brassicales-Malvales View MSA
124339377 5266 SBM View MSA
124248470 5268 Malvidae View MSA
124062178 5270 Rosid View MSA
123748588 5271 Pentapetalae View MSA
122790006 5272 Eudicot View MSA
122047205 5273 Angiosperm View MSA
121346000 5274 Embryophyte View MSA
123425892 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain