Gene : Cagra.3706s0004 C. grandiflora v1.1
Defline:  (1 of 2) PTHR16223:SF10 - TRANSCRIPTION FACTOR BHLH128-RELATED Genomic Order:  4
Name:  ? Cagra.3706s0004 Secondary Identifier:  ? PAC:28901088
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3706s0004 0.5kb upstream 0.5kb upstream 4027 true Scaffold3706: 11084-15110 Capsella grandiflora
Cagra.3706s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold3706: 14611-15110 Capsella grandiflora
Cagra.3706s0004 0.5kb downstream 0.5kb downstream 4027 true Scaffold3706: 10584-14610 Capsella grandiflora
Cagra.3706s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold3706: 10584-11083 Capsella grandiflora
Cagra.3706s0004 1.0kb upstream 1.0kb upstream 4527 true Scaffold3706: 11084-15610 Capsella grandiflora
Cagra.3706s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold3706: 14611-15610 Capsella grandiflora
Cagra.3706s0004 1.0kb downstream 1.0kb downstream 4527 true Scaffold3706: 10084-14610 Capsella grandiflora
Cagra.3706s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold3706: 10084-11083 Capsella grandiflora
Cagra.3706s0004 2.0kb upstream 2.0kb upstream 5527 true Scaffold3706: 11084-16610 Capsella grandiflora
Cagra.3706s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold3706: 14611-16610 Capsella grandiflora
Cagra.3706s0004 2.0kb downstream 2.0kb downstream 5527 true Scaffold3706: 9084-14610 Capsella grandiflora
Cagra.3706s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold3706: 9084-11083 Capsella grandiflora
Cagra.3706s0004 5.0kb upstream 5.0kb upstream 8527 true Scaffold3706: 11084-19610 Capsella grandiflora
Cagra.3706s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold3706: 14611-19610 Capsella grandiflora
Cagra.3706s0004 5.0kb downstream 5.0kb downstream 8527 true Scaffold3706: 6084-14610 Capsella grandiflora
Cagra.3706s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold3706: 6084-11083 Capsella grandiflora
Cagra.3706s0004 10.0kb upstream 10.0kb upstream 13527 true Scaffold3706: 11084-24610 Capsella grandiflora
Cagra.3706s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold3706: 14611-24610 Capsella grandiflora
Cagra.3706s0004 10.0kb downstream 10.0kb downstream 13527 true Scaffold3706: 1084-14610 Capsella grandiflora
Cagra.3706s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold3706: 1084-11083 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360711 5261 Brassicaceae View MSA
123798013 5264 Brassicales-Malvales View MSA
124295701 5266 SBM View MSA
124148071 5268 Malvidae View MSA
124061525 5270 Rosid View MSA
123751595 5271 Pentapetalae View MSA
122793357 5272 Eudicot View MSA
122051356 5273 Angiosperm View MSA
121349754 5274 Embryophyte View MSA
123381429 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain