Gene : Cagra.3568s0005 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11680:SF12 - SERINE HYDROXYMETHYLTRANSFERASE 2, MITOCHONDRIAL Genomic Order:  5
Name:  ? Cagra.3568s0005 Secondary Identifier:  ? PAC:28905243
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLYSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-2161 Capsella grandiflora pathologic  
Cgrandiflora PWY-3841 Capsella grandiflora pathologic  
Cgrandiflora SER-GLYSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3568s0005 0.5kb upstream 0.5kb upstream 3805 true Scaffold3568: 28207-32011 Capsella grandiflora
Cagra.3568s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold3568: 28207-28706 Capsella grandiflora
Cagra.3568s0005 0.5kb downstream 0.5kb downstream 3805 true Scaffold3568: 28707-32511 Capsella grandiflora
Cagra.3568s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold3568: 32012-32511 Capsella grandiflora
Cagra.3568s0005 1.0kb upstream 1.0kb upstream 4305 true Scaffold3568: 27707-32011 Capsella grandiflora
Cagra.3568s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold3568: 27707-28706 Capsella grandiflora
Cagra.3568s0005 1.0kb downstream 1.0kb downstream 4305 true Scaffold3568: 28707-33011 Capsella grandiflora
Cagra.3568s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold3568: 32012-33011 Capsella grandiflora
Cagra.3568s0005 2.0kb upstream 2.0kb upstream 5305 true Scaffold3568: 26707-32011 Capsella grandiflora
Cagra.3568s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold3568: 26707-28706 Capsella grandiflora
Cagra.3568s0005 2.0kb downstream 2.0kb downstream 5305 true Scaffold3568: 28707-34011 Capsella grandiflora
Cagra.3568s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold3568: 32012-34011 Capsella grandiflora
Cagra.3568s0005 5.0kb upstream 5.0kb upstream 8305 true Scaffold3568: 23707-32011 Capsella grandiflora
Cagra.3568s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold3568: 23707-28706 Capsella grandiflora
Cagra.3568s0005 5.0kb downstream 5.0kb downstream 6558 true Scaffold3568: 28707-35264 Capsella grandiflora
Cagra.3568s0005 5.0kb downstream 5.0kb downstream 3253 false Scaffold3568: 32012-35264 Capsella grandiflora
Cagra.3568s0005 10.0kb upstream 10.0kb upstream 13305 true Scaffold3568: 18707-32011 Capsella grandiflora
Cagra.3568s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold3568: 18707-28706 Capsella grandiflora
Cagra.3568s0005 10.0kb downstream 10.0kb downstream 6558 true Scaffold3568: 28707-35264 Capsella grandiflora
Cagra.3568s0005 10.0kb downstream 10.0kb downstream 3253 false Scaffold3568: 32012-35264 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369702 5261 Brassicaceae View MSA
123827515 5264 Brassicales-Malvales View MSA
124339433 5266 SBM View MSA
124239143 5268 Malvidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain