Gene : Cagra.3598s0012 C. grandiflora v1.1
Defline:  (1 of 3) 1.2.1.13 - Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (phosphorylating) / Triosephosphate dehydrogenase (NADP+) Genomic Order:  12
Name:  ? Cagra.3598s0012 Secondary Identifier:  ? PAC:28906411
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Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora ANAEROFRUCAT-PWY Capsella grandiflora pathologic  
Cgrandiflora ANAGLYCOLYSIS-PWY Capsella grandiflora pathologic  
Cgrandiflora CALVIN-PWY Capsella grandiflora pathologic  
Cgrandiflora GLUCONEO-PWY Capsella grandiflora pathologic  
Cgrandiflora PHOTOALL-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-1042 Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY66-399 Capsella grandiflora pathologic  
Cgrandiflora SUCSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3598s0012 0.5kb upstream 0.5kb upstream 2418 true Scaffold3598: 41245-43662 Capsella grandiflora
Cagra.3598s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold3598: 41245-41744 Capsella grandiflora
Cagra.3598s0012 0.5kb downstream 0.5kb downstream 2418 true Scaffold3598: 41745-44162 Capsella grandiflora
Cagra.3598s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold3598: 43663-44162 Capsella grandiflora
Cagra.3598s0012 1.0kb upstream 1.0kb upstream 2918 true Scaffold3598: 40745-43662 Capsella grandiflora
Cagra.3598s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold3598: 40745-41744 Capsella grandiflora
Cagra.3598s0012 1.0kb downstream 1.0kb downstream 2918 true Scaffold3598: 41745-44662 Capsella grandiflora
Cagra.3598s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold3598: 43663-44662 Capsella grandiflora
Cagra.3598s0012 2.0kb upstream 2.0kb upstream 3918 true Scaffold3598: 39745-43662 Capsella grandiflora
Cagra.3598s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold3598: 39745-41744 Capsella grandiflora
Cagra.3598s0012 2.0kb downstream 2.0kb downstream 3918 true Scaffold3598: 41745-45662 Capsella grandiflora
Cagra.3598s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold3598: 43663-45662 Capsella grandiflora
Cagra.3598s0012 5.0kb upstream 5.0kb upstream 6918 true Scaffold3598: 36745-43662 Capsella grandiflora
Cagra.3598s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold3598: 36745-41744 Capsella grandiflora
Cagra.3598s0012 5.0kb downstream 5.0kb downstream 6918 true Scaffold3598: 41745-48662 Capsella grandiflora
Cagra.3598s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold3598: 43663-48662 Capsella grandiflora
Cagra.3598s0012 10.0kb upstream 10.0kb upstream 11918 true Scaffold3598: 31745-43662 Capsella grandiflora
Cagra.3598s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold3598: 31745-41744 Capsella grandiflora
Cagra.3598s0012 10.0kb downstream 10.0kb downstream 11918 true Scaffold3598: 41745-53662 Capsella grandiflora
Cagra.3598s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold3598: 43663-53662 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376732 5261 Brassicaceae View MSA
123837960 5264 Brassicales-Malvales View MSA
124344179 5266 SBM View MSA
124254162 5268 Malvidae View MSA
124061607 5270 Rosid View MSA
123737488 5271 Pentapetalae View MSA
122795007 5272 Eudicot View MSA
122045489 5273 Angiosperm View MSA
121346351 5274 Embryophyte View MSA
123425156 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain