Gene : Cagra.3527s0014 C. grandiflora v1.1
Defline:  (1 of 5) PTHR24326:SF140 - HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT1-RELATED Genomic Order:  14
Name:  ? Cagra.3527s0014 Secondary Identifier:  ? PAC:28898555
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3527s0014 0.5kb upstream 0.5kb upstream 2550 true Scaffold3527: 52446-54995 Capsella grandiflora
Cagra.3527s0014 0.5kb upstream 0.5kb upstream 500 false Scaffold3527: 52446-52945 Capsella grandiflora
Cagra.3527s0014 0.5kb downstream 0.5kb downstream 2550 true Scaffold3527: 52946-55495 Capsella grandiflora
Cagra.3527s0014 0.5kb downstream 0.5kb downstream 500 false Scaffold3527: 54996-55495 Capsella grandiflora
Cagra.3527s0014 1.0kb upstream 1.0kb upstream 3050 true Scaffold3527: 51946-54995 Capsella grandiflora
Cagra.3527s0014 1.0kb upstream 1.0kb upstream 1000 false Scaffold3527: 51946-52945 Capsella grandiflora
Cagra.3527s0014 1.0kb downstream 1.0kb downstream 3050 true Scaffold3527: 52946-55995 Capsella grandiflora
Cagra.3527s0014 1.0kb downstream 1.0kb downstream 1000 false Scaffold3527: 54996-55995 Capsella grandiflora
Cagra.3527s0014 2.0kb upstream 2.0kb upstream 4050 true Scaffold3527: 50946-54995 Capsella grandiflora
Cagra.3527s0014 2.0kb upstream 2.0kb upstream 2000 false Scaffold3527: 50946-52945 Capsella grandiflora
Cagra.3527s0014 2.0kb downstream 2.0kb downstream 4050 true Scaffold3527: 52946-56995 Capsella grandiflora
Cagra.3527s0014 2.0kb downstream 2.0kb downstream 2000 false Scaffold3527: 54996-56995 Capsella grandiflora
Cagra.3527s0014 5.0kb upstream 5.0kb upstream 7050 true Scaffold3527: 47946-54995 Capsella grandiflora
Cagra.3527s0014 5.0kb upstream 5.0kb upstream 5000 false Scaffold3527: 47946-52945 Capsella grandiflora
Cagra.3527s0014 5.0kb downstream 5.0kb downstream 7050 true Scaffold3527: 52946-59995 Capsella grandiflora
Cagra.3527s0014 5.0kb downstream 5.0kb downstream 5000 false Scaffold3527: 54996-59995 Capsella grandiflora
Cagra.3527s0014 10.0kb upstream 10.0kb upstream 12050 true Scaffold3527: 42946-54995 Capsella grandiflora
Cagra.3527s0014 10.0kb upstream 10.0kb upstream 10000 false Scaffold3527: 42946-52945 Capsella grandiflora
Cagra.3527s0014 10.0kb downstream 10.0kb downstream 12050 true Scaffold3527: 52946-64995 Capsella grandiflora
Cagra.3527s0014 10.0kb downstream 10.0kb downstream 10000 false Scaffold3527: 54996-64995 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368334 5261 Brassicaceae View MSA
123841291 5264 Brassicales-Malvales View MSA
124341422 5266 SBM View MSA
124253490 5268 Malvidae View MSA
124067776 5270 Rosid View MSA
123750292 5271 Pentapetalae View MSA
122791137 5272 Eudicot View MSA
122050134 5273 Angiosperm View MSA
121351534 5274 Embryophyte View MSA
123382211 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain