Gene : Cagra.3527s0040 C. grandiflora v1.1
Defline:  (1 of 4) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Genomic Order:  40
Name:  ? Cagra.3527s0040 Secondary Identifier:  ? PAC:28898551
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLYOXYLATE-BYPASS Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY-561 Capsella grandiflora pathologic  
Cgrandiflora PWY-5690 Capsella grandiflora pathologic  
Cgrandiflora PWY-6549 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3527s0040 0.5kb upstream 0.5kb upstream 3801 true Scaffold3527: 164088-167888 Capsella grandiflora
Cagra.3527s0040 0.5kb upstream 0.5kb upstream 500 false Scaffold3527: 167389-167888 Capsella grandiflora
Cagra.3527s0040 0.5kb downstream 0.5kb downstream 3801 true Scaffold3527: 163588-167388 Capsella grandiflora
Cagra.3527s0040 0.5kb downstream 0.5kb downstream 500 false Scaffold3527: 163588-164087 Capsella grandiflora
Cagra.3527s0040 1.0kb upstream 1.0kb upstream 4301 true Scaffold3527: 164088-168388 Capsella grandiflora
Cagra.3527s0040 1.0kb upstream 1.0kb upstream 1000 false Scaffold3527: 167389-168388 Capsella grandiflora
Cagra.3527s0040 1.0kb downstream 1.0kb downstream 4301 true Scaffold3527: 163088-167388 Capsella grandiflora
Cagra.3527s0040 1.0kb downstream 1.0kb downstream 1000 false Scaffold3527: 163088-164087 Capsella grandiflora
Cagra.3527s0040 2.0kb upstream 2.0kb upstream 5301 true Scaffold3527: 164088-169388 Capsella grandiflora
Cagra.3527s0040 2.0kb upstream 2.0kb upstream 2000 false Scaffold3527: 167389-169388 Capsella grandiflora
Cagra.3527s0040 2.0kb downstream 2.0kb downstream 5301 true Scaffold3527: 162088-167388 Capsella grandiflora
Cagra.3527s0040 2.0kb downstream 2.0kb downstream 2000 false Scaffold3527: 162088-164087 Capsella grandiflora
Cagra.3527s0040 5.0kb upstream 5.0kb upstream 8301 true Scaffold3527: 164088-172388 Capsella grandiflora
Cagra.3527s0040 5.0kb upstream 5.0kb upstream 5000 false Scaffold3527: 167389-172388 Capsella grandiflora
Cagra.3527s0040 5.0kb downstream 5.0kb downstream 8301 true Scaffold3527: 159088-167388 Capsella grandiflora
Cagra.3527s0040 5.0kb downstream 5.0kb downstream 5000 false Scaffold3527: 159088-164087 Capsella grandiflora
Cagra.3527s0040 10.0kb upstream 10.0kb upstream 13301 true Scaffold3527: 164088-177388 Capsella grandiflora
Cagra.3527s0040 10.0kb upstream 10.0kb upstream 10000 false Scaffold3527: 167389-177388 Capsella grandiflora
Cagra.3527s0040 10.0kb downstream 10.0kb downstream 13301 true Scaffold3527: 154088-167388 Capsella grandiflora
Cagra.3527s0040 10.0kb downstream 10.0kb downstream 10000 false Scaffold3527: 154088-164087 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041314 5273 Angiosperm View MSA
122368215 5261 Brassicaceae View MSA
123799513 5264 Brassicales-Malvales View MSA
124297025 5266 SBM View MSA
124250397 5268 Malvidae View MSA
124068700 5270 Rosid View MSA
123737684 5271 Pentapetalae View MSA
122792616 5272 Eudicot View MSA
121345226 5274 Embryophyte View MSA
123424186 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain