Gene : Cagra.3527s0062 C. grandiflora v1.1
Defline:  (1 of 3) PTHR31375:SF2 - POLYGALACTURONASE/PECTINASE Genomic Order:  62
Name:  ? Cagra.3527s0062 Secondary Identifier:  ? PAC:28898530
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3527s0062 0.5kb upstream 0.5kb upstream 2509 true Scaffold3527: 249435-251943 Capsella grandiflora
Cagra.3527s0062 0.5kb upstream 0.5kb upstream 500 false Scaffold3527: 249435-249934 Capsella grandiflora
Cagra.3527s0062 0.5kb downstream 0.5kb downstream 2509 true Scaffold3527: 249935-252443 Capsella grandiflora
Cagra.3527s0062 0.5kb downstream 0.5kb downstream 500 false Scaffold3527: 251944-252443 Capsella grandiflora
Cagra.3527s0062 1.0kb upstream 1.0kb upstream 3009 true Scaffold3527: 248935-251943 Capsella grandiflora
Cagra.3527s0062 1.0kb upstream 1.0kb upstream 1000 false Scaffold3527: 248935-249934 Capsella grandiflora
Cagra.3527s0062 1.0kb downstream 1.0kb downstream 3009 true Scaffold3527: 249935-252943 Capsella grandiflora
Cagra.3527s0062 1.0kb downstream 1.0kb downstream 1000 false Scaffold3527: 251944-252943 Capsella grandiflora
Cagra.3527s0062 2.0kb upstream 2.0kb upstream 4009 true Scaffold3527: 247935-251943 Capsella grandiflora
Cagra.3527s0062 2.0kb upstream 2.0kb upstream 2000 false Scaffold3527: 247935-249934 Capsella grandiflora
Cagra.3527s0062 2.0kb downstream 2.0kb downstream 4009 true Scaffold3527: 249935-253943 Capsella grandiflora
Cagra.3527s0062 2.0kb downstream 2.0kb downstream 2000 false Scaffold3527: 251944-253943 Capsella grandiflora
Cagra.3527s0062 5.0kb upstream 5.0kb upstream 7009 true Scaffold3527: 244935-251943 Capsella grandiflora
Cagra.3527s0062 5.0kb upstream 5.0kb upstream 5000 false Scaffold3527: 244935-249934 Capsella grandiflora
Cagra.3527s0062 5.0kb downstream 5.0kb downstream 7009 true Scaffold3527: 249935-256943 Capsella grandiflora
Cagra.3527s0062 5.0kb downstream 5.0kb downstream 5000 false Scaffold3527: 251944-256943 Capsella grandiflora
Cagra.3527s0062 10.0kb upstream 10.0kb upstream 12009 true Scaffold3527: 239935-251943 Capsella grandiflora
Cagra.3527s0062 10.0kb upstream 10.0kb upstream 10000 false Scaffold3527: 239935-249934 Capsella grandiflora
Cagra.3527s0062 10.0kb downstream 10.0kb downstream 12009 true Scaffold3527: 249935-261943 Capsella grandiflora
Cagra.3527s0062 10.0kb downstream 10.0kb downstream 10000 false Scaffold3527: 251944-261943 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365948 5261 Brassicaceae View MSA
123837359 5264 Brassicales-Malvales View MSA
124322295 5266 SBM View MSA
124252972 5268 Malvidae View MSA
124060937 5270 Rosid View MSA
123747300 5271 Pentapetalae View MSA
122794998 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain