Gene : Cagra.3528s0013 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10209:SF226 - 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN Genomic Order:  13
Name:  ? Cagra.3528s0013 Secondary Identifier:  ? PAC:28906446
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5125 Capsella grandiflora pathologic  
Cgrandiflora PWY-641 Capsella grandiflora pathologic  
Cgrandiflora PWY-7267 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3528s0013 0.5kb upstream 0.5kb upstream 1970 true Scaffold3528: 45076-47045 Capsella grandiflora
Cagra.3528s0013 0.5kb upstream 0.5kb upstream 500 false Scaffold3528: 45076-45575 Capsella grandiflora
Cagra.3528s0013 0.5kb downstream 0.5kb downstream 1970 true Scaffold3528: 45576-47545 Capsella grandiflora
Cagra.3528s0013 0.5kb downstream 0.5kb downstream 500 false Scaffold3528: 47046-47545 Capsella grandiflora
Cagra.3528s0013 1.0kb upstream 1.0kb upstream 2470 true Scaffold3528: 44576-47045 Capsella grandiflora
Cagra.3528s0013 1.0kb upstream 1.0kb upstream 1000 false Scaffold3528: 44576-45575 Capsella grandiflora
Cagra.3528s0013 1.0kb downstream 1.0kb downstream 2470 true Scaffold3528: 45576-48045 Capsella grandiflora
Cagra.3528s0013 1.0kb downstream 1.0kb downstream 1000 false Scaffold3528: 47046-48045 Capsella grandiflora
Cagra.3528s0013 2.0kb upstream 2.0kb upstream 3470 true Scaffold3528: 43576-47045 Capsella grandiflora
Cagra.3528s0013 2.0kb upstream 2.0kb upstream 2000 false Scaffold3528: 43576-45575 Capsella grandiflora
Cagra.3528s0013 2.0kb downstream 2.0kb downstream 3470 true Scaffold3528: 45576-49045 Capsella grandiflora
Cagra.3528s0013 2.0kb downstream 2.0kb downstream 2000 false Scaffold3528: 47046-49045 Capsella grandiflora
Cagra.3528s0013 5.0kb upstream 5.0kb upstream 6470 true Scaffold3528: 40576-47045 Capsella grandiflora
Cagra.3528s0013 5.0kb upstream 5.0kb upstream 5000 false Scaffold3528: 40576-45575 Capsella grandiflora
Cagra.3528s0013 5.0kb downstream 5.0kb downstream 6470 true Scaffold3528: 45576-52045 Capsella grandiflora
Cagra.3528s0013 5.0kb downstream 5.0kb downstream 5000 false Scaffold3528: 47046-52045 Capsella grandiflora
Cagra.3528s0013 10.0kb upstream 10.0kb upstream 11470 true Scaffold3528: 35576-47045 Capsella grandiflora
Cagra.3528s0013 10.0kb upstream 10.0kb upstream 10000 false Scaffold3528: 35576-45575 Capsella grandiflora
Cagra.3528s0013 10.0kb downstream 10.0kb downstream 11470 true Scaffold3528: 45576-57045 Capsella grandiflora
Cagra.3528s0013 10.0kb downstream 10.0kb downstream 10000 false Scaffold3528: 47046-57045 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026742 5273 Angiosperm View MSA
122370796 5261 Brassicaceae View MSA
123828871 5264 Brassicales-Malvales View MSA
124341199 5266 SBM View MSA
124237151 5268 Malvidae View MSA
124062764 5270 Rosid View MSA
123736643 5271 Pentapetalae View MSA
122786747 5272 Eudicot View MSA
121347125 5274 Embryophyte View MSA
123380497 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain