Gene : Cagra.3517s0043 C. grandiflora v1.1
Defline:  (1 of 1) PTHR13464 - TRANSCRIPTIONAL REGULATOR PROTEIN HCNGP Genomic Order:  43
Name:  ? Cagra.3517s0043 Secondary Identifier:  ? PAC:28916880
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3517s0043 0.5kb upstream 0.5kb upstream 3149 true Scaffold3517: 141470-144618 Capsella grandiflora
Cagra.3517s0043 0.5kb upstream 0.5kb upstream 500 false Scaffold3517: 141470-141969 Capsella grandiflora
Cagra.3517s0043 0.5kb downstream 0.5kb downstream 3149 true Scaffold3517: 141970-145118 Capsella grandiflora
Cagra.3517s0043 0.5kb downstream 0.5kb downstream 500 false Scaffold3517: 144619-145118 Capsella grandiflora
Cagra.3517s0043 1.0kb upstream 1.0kb upstream 3649 true Scaffold3517: 140970-144618 Capsella grandiflora
Cagra.3517s0043 1.0kb upstream 1.0kb upstream 1000 false Scaffold3517: 140970-141969 Capsella grandiflora
Cagra.3517s0043 1.0kb downstream 1.0kb downstream 3649 true Scaffold3517: 141970-145618 Capsella grandiflora
Cagra.3517s0043 1.0kb downstream 1.0kb downstream 1000 false Scaffold3517: 144619-145618 Capsella grandiflora
Cagra.3517s0043 2.0kb upstream 2.0kb upstream 4649 true Scaffold3517: 139970-144618 Capsella grandiflora
Cagra.3517s0043 2.0kb upstream 2.0kb upstream 2000 false Scaffold3517: 139970-141969 Capsella grandiflora
Cagra.3517s0043 2.0kb downstream 2.0kb downstream 4649 true Scaffold3517: 141970-146618 Capsella grandiflora
Cagra.3517s0043 2.0kb downstream 2.0kb downstream 2000 false Scaffold3517: 144619-146618 Capsella grandiflora
Cagra.3517s0043 5.0kb upstream 5.0kb upstream 7649 true Scaffold3517: 136970-144618 Capsella grandiflora
Cagra.3517s0043 5.0kb upstream 5.0kb upstream 5000 false Scaffold3517: 136970-141969 Capsella grandiflora
Cagra.3517s0043 5.0kb downstream 5.0kb downstream 7649 true Scaffold3517: 141970-149618 Capsella grandiflora
Cagra.3517s0043 5.0kb downstream 5.0kb downstream 5000 false Scaffold3517: 144619-149618 Capsella grandiflora
Cagra.3517s0043 10.0kb upstream 10.0kb upstream 12649 true Scaffold3517: 131970-144618 Capsella grandiflora
Cagra.3517s0043 10.0kb upstream 10.0kb upstream 10000 false Scaffold3517: 131970-141969 Capsella grandiflora
Cagra.3517s0043 10.0kb downstream 10.0kb downstream 12649 true Scaffold3517: 141970-154618 Capsella grandiflora
Cagra.3517s0043 10.0kb downstream 10.0kb downstream 10000 false Scaffold3517: 144619-154618 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361317 5261 Brassicaceae View MSA
123833240 5264 Brassicales-Malvales View MSA
124338784 5266 SBM View MSA
124250561 5268 Malvidae View MSA
124067157 5270 Rosid View MSA
123739885 5271 Pentapetalae View MSA
122794219 5272 Eudicot View MSA
122042858 5273 Angiosperm View MSA
123429181 5275 Viridiplantae View MSA
121344834 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain