Gene : Cagra.3519s0006 C. grandiflora v1.1
Defline:  (1 of 2) 2.7.1.91 - Sphinganine kinase / Dihydrosphingosine kinase Genomic Order:  6
Name:  ? Cagra.3519s0006 Secondary Identifier:  ? PAC:28893882
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5129 Capsella grandiflora pathologic  
Cgrandiflora PWY-6483 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3519s0006 0.5kb upstream 0.5kb upstream 3707 true Scaffold3519: 17593-21299 Capsella grandiflora
Cagra.3519s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold3519: 17593-18092 Capsella grandiflora
Cagra.3519s0006 0.5kb downstream 0.5kb downstream 3707 true Scaffold3519: 18093-21799 Capsella grandiflora
Cagra.3519s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold3519: 21300-21799 Capsella grandiflora
Cagra.3519s0006 1.0kb upstream 1.0kb upstream 4207 true Scaffold3519: 17093-21299 Capsella grandiflora
Cagra.3519s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold3519: 17093-18092 Capsella grandiflora
Cagra.3519s0006 1.0kb downstream 1.0kb downstream 4207 true Scaffold3519: 18093-22299 Capsella grandiflora
Cagra.3519s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold3519: 21300-22299 Capsella grandiflora
Cagra.3519s0006 2.0kb upstream 2.0kb upstream 5207 true Scaffold3519: 16093-21299 Capsella grandiflora
Cagra.3519s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold3519: 16093-18092 Capsella grandiflora
Cagra.3519s0006 2.0kb downstream 2.0kb downstream 5207 true Scaffold3519: 18093-23299 Capsella grandiflora
Cagra.3519s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold3519: 21300-23299 Capsella grandiflora
Cagra.3519s0006 5.0kb upstream 5.0kb upstream 8207 true Scaffold3519: 13093-21299 Capsella grandiflora
Cagra.3519s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold3519: 13093-18092 Capsella grandiflora
Cagra.3519s0006 5.0kb downstream 5.0kb downstream 8207 true Scaffold3519: 18093-26299 Capsella grandiflora
Cagra.3519s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold3519: 21300-26299 Capsella grandiflora
Cagra.3519s0006 10.0kb upstream 10.0kb upstream 13207 true Scaffold3519: 8093-21299 Capsella grandiflora
Cagra.3519s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold3519: 8093-18092 Capsella grandiflora
Cagra.3519s0006 10.0kb downstream 10.0kb downstream 13207 true Scaffold3519: 18093-31299 Capsella grandiflora
Cagra.3519s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold3519: 21300-31299 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369288 5261 Brassicaceae View MSA
123827390 5264 Brassicales-Malvales View MSA
124339583 5266 SBM View MSA
124247883 5268 Malvidae View MSA
124066639 5270 Rosid View MSA
123737091 5271 Pentapetalae View MSA
122793625 5272 Eudicot View MSA
122045440 5273 Angiosperm View MSA
121350923 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain