Gene : Cagra.3519s0005 C. grandiflora v1.1
Defline:  (1 of 2) 2.7.1.91 - Sphinganine kinase / Dihydrosphingosine kinase Genomic Order:  5
Name:  ? Cagra.3519s0005 Secondary Identifier:  ? PAC:28893900
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5129 Capsella grandiflora pathologic  
Cgrandiflora PWY-6483 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3519s0005 0.5kb upstream 0.5kb upstream 3535 true Scaffold3519: 14188-17722 Capsella grandiflora
Cagra.3519s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold3519: 14188-14687 Capsella grandiflora
Cagra.3519s0005 0.5kb downstream 0.5kb downstream 3535 true Scaffold3519: 14688-18222 Capsella grandiflora
Cagra.3519s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold3519: 17723-18222 Capsella grandiflora
Cagra.3519s0005 1.0kb upstream 1.0kb upstream 4035 true Scaffold3519: 13688-17722 Capsella grandiflora
Cagra.3519s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold3519: 13688-14687 Capsella grandiflora
Cagra.3519s0005 1.0kb downstream 1.0kb downstream 4035 true Scaffold3519: 14688-18722 Capsella grandiflora
Cagra.3519s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold3519: 17723-18722 Capsella grandiflora
Cagra.3519s0005 2.0kb upstream 2.0kb upstream 5035 true Scaffold3519: 12688-17722 Capsella grandiflora
Cagra.3519s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold3519: 12688-14687 Capsella grandiflora
Cagra.3519s0005 2.0kb downstream 2.0kb downstream 5035 true Scaffold3519: 14688-19722 Capsella grandiflora
Cagra.3519s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold3519: 17723-19722 Capsella grandiflora
Cagra.3519s0005 5.0kb upstream 5.0kb upstream 8035 true Scaffold3519: 9688-17722 Capsella grandiflora
Cagra.3519s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold3519: 9688-14687 Capsella grandiflora
Cagra.3519s0005 5.0kb downstream 5.0kb downstream 8035 true Scaffold3519: 14688-22722 Capsella grandiflora
Cagra.3519s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold3519: 17723-22722 Capsella grandiflora
Cagra.3519s0005 10.0kb upstream 10.0kb upstream 13035 true Scaffold3519: 4688-17722 Capsella grandiflora
Cagra.3519s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold3519: 4688-14687 Capsella grandiflora
Cagra.3519s0005 10.0kb downstream 10.0kb downstream 13035 true Scaffold3519: 14688-27722 Capsella grandiflora
Cagra.3519s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold3519: 17723-27722 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366251 5261 Brassicaceae View MSA
123799137 5264 Brassicales-Malvales View MSA
124296686 5266 SBM View MSA
124247883 5268 Malvidae View MSA
124066639 5270 Rosid View MSA
123737091 5271 Pentapetalae View MSA
122793625 5272 Eudicot View MSA
122045440 5273 Angiosperm View MSA
121350923 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain