Gene : Cagra.3501s0087 C. grandiflora v1.1
Defline:  (1 of 1) PTHR33399:SF5 - PSBQ-LIKE PROTEIN 1, CHLOROPLASTIC Genomic Order:  87
Name:  ? Cagra.3501s0087 Secondary Identifier:  ? PAC:28902342
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3501s0087 0.5kb upstream 0.5kb upstream 1680 true Scaffold3501: 316261-317940 Capsella grandiflora
Cagra.3501s0087 0.5kb upstream 0.5kb upstream 500 false Scaffold3501: 317441-317940 Capsella grandiflora
Cagra.3501s0087 0.5kb downstream 0.5kb downstream 1680 true Scaffold3501: 315761-317440 Capsella grandiflora
Cagra.3501s0087 0.5kb downstream 0.5kb downstream 500 false Scaffold3501: 315761-316260 Capsella grandiflora
Cagra.3501s0087 1.0kb upstream 1.0kb upstream 2180 true Scaffold3501: 316261-318440 Capsella grandiflora
Cagra.3501s0087 1.0kb upstream 1.0kb upstream 1000 false Scaffold3501: 317441-318440 Capsella grandiflora
Cagra.3501s0087 1.0kb downstream 1.0kb downstream 2180 true Scaffold3501: 315261-317440 Capsella grandiflora
Cagra.3501s0087 1.0kb downstream 1.0kb downstream 1000 false Scaffold3501: 315261-316260 Capsella grandiflora
Cagra.3501s0087 2.0kb upstream 2.0kb upstream 3180 true Scaffold3501: 316261-319440 Capsella grandiflora
Cagra.3501s0087 2.0kb upstream 2.0kb upstream 2000 false Scaffold3501: 317441-319440 Capsella grandiflora
Cagra.3501s0087 2.0kb downstream 2.0kb downstream 3180 true Scaffold3501: 314261-317440 Capsella grandiflora
Cagra.3501s0087 2.0kb downstream 2.0kb downstream 2000 false Scaffold3501: 314261-316260 Capsella grandiflora
Cagra.3501s0087 5.0kb upstream 5.0kb upstream 6180 true Scaffold3501: 316261-322440 Capsella grandiflora
Cagra.3501s0087 5.0kb upstream 5.0kb upstream 5000 false Scaffold3501: 317441-322440 Capsella grandiflora
Cagra.3501s0087 5.0kb downstream 5.0kb downstream 6180 true Scaffold3501: 311261-317440 Capsella grandiflora
Cagra.3501s0087 5.0kb downstream 5.0kb downstream 5000 false Scaffold3501: 311261-316260 Capsella grandiflora
Cagra.3501s0087 10.0kb upstream 10.0kb upstream 11180 true Scaffold3501: 316261-327440 Capsella grandiflora
Cagra.3501s0087 10.0kb upstream 10.0kb upstream 10000 false Scaffold3501: 317441-327440 Capsella grandiflora
Cagra.3501s0087 10.0kb downstream 10.0kb downstream 11180 true Scaffold3501: 306261-317440 Capsella grandiflora
Cagra.3501s0087 10.0kb downstream 10.0kb downstream 10000 false Scaffold3501: 306261-316260 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361044 5261 Brassicaceae View MSA
123841629 5264 Brassicales-Malvales View MSA
124351392 5266 SBM View MSA
124240408 5268 Malvidae View MSA
124061087 5270 Rosid View MSA
123739021 5271 Pentapetalae View MSA
122786264 5272 Eudicot View MSA
122043406 5273 Angiosperm View MSA
121310117 5274 Embryophyte View MSA
123347693 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain