Gene : Cagra.3501s0136 C. grandiflora v1.1
Defline:  (1 of 27) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  136
Name:  ? Cagra.3501s0136 Secondary Identifier:  ? PAC:28902248
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3501s0136 0.5kb upstream 0.5kb upstream 4082 true Scaffold3501: 482085-486166 Capsella grandiflora
Cagra.3501s0136 0.5kb upstream 0.5kb upstream 500 false Scaffold3501: 482085-482584 Capsella grandiflora
Cagra.3501s0136 0.5kb downstream 0.5kb downstream 4082 true Scaffold3501: 482585-486666 Capsella grandiflora
Cagra.3501s0136 0.5kb downstream 0.5kb downstream 500 false Scaffold3501: 486167-486666 Capsella grandiflora
Cagra.3501s0136 1.0kb upstream 1.0kb upstream 4582 true Scaffold3501: 481585-486166 Capsella grandiflora
Cagra.3501s0136 1.0kb upstream 1.0kb upstream 1000 false Scaffold3501: 481585-482584 Capsella grandiflora
Cagra.3501s0136 1.0kb downstream 1.0kb downstream 4582 true Scaffold3501: 482585-487166 Capsella grandiflora
Cagra.3501s0136 1.0kb downstream 1.0kb downstream 1000 false Scaffold3501: 486167-487166 Capsella grandiflora
Cagra.3501s0136 2.0kb upstream 2.0kb upstream 5582 true Scaffold3501: 480585-486166 Capsella grandiflora
Cagra.3501s0136 2.0kb upstream 2.0kb upstream 2000 false Scaffold3501: 480585-482584 Capsella grandiflora
Cagra.3501s0136 2.0kb downstream 2.0kb downstream 5582 true Scaffold3501: 482585-488166 Capsella grandiflora
Cagra.3501s0136 2.0kb downstream 2.0kb downstream 2000 false Scaffold3501: 486167-488166 Capsella grandiflora
Cagra.3501s0136 5.0kb upstream 5.0kb upstream 8582 true Scaffold3501: 477585-486166 Capsella grandiflora
Cagra.3501s0136 5.0kb upstream 5.0kb upstream 5000 false Scaffold3501: 477585-482584 Capsella grandiflora
Cagra.3501s0136 5.0kb downstream 5.0kb downstream 8582 true Scaffold3501: 482585-491166 Capsella grandiflora
Cagra.3501s0136 5.0kb downstream 5.0kb downstream 5000 false Scaffold3501: 486167-491166 Capsella grandiflora
Cagra.3501s0136 10.0kb upstream 10.0kb upstream 13582 true Scaffold3501: 472585-486166 Capsella grandiflora
Cagra.3501s0136 10.0kb upstream 10.0kb upstream 10000 false Scaffold3501: 472585-482584 Capsella grandiflora
Cagra.3501s0136 10.0kb downstream 10.0kb downstream 13582 true Scaffold3501: 482585-496166 Capsella grandiflora
Cagra.3501s0136 10.0kb downstream 10.0kb downstream 10000 false Scaffold3501: 486167-496166 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362715 5261 Brassicaceae View MSA
123841697 5264 Brassicales-Malvales View MSA
124340137 5266 SBM View MSA
124240017 5268 Malvidae View MSA
124072513 5270 Rosid View MSA
123747473 5271 Pentapetalae View MSA
122794645 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain