Gene : Cagra.3501s0165 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12161:SF23 - REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  165
Name:  ? Cagra.3501s0165 Secondary Identifier:  ? PAC:28902263
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3501s0165 0.5kb upstream 0.5kb upstream 2183 true Scaffold3501: 571034-573216 Capsella grandiflora
Cagra.3501s0165 0.5kb upstream 0.5kb upstream 500 false Scaffold3501: 571034-571533 Capsella grandiflora
Cagra.3501s0165 0.5kb downstream 0.5kb downstream 2183 true Scaffold3501: 571534-573716 Capsella grandiflora
Cagra.3501s0165 0.5kb downstream 0.5kb downstream 500 false Scaffold3501: 573217-573716 Capsella grandiflora
Cagra.3501s0165 1.0kb upstream 1.0kb upstream 2683 true Scaffold3501: 570534-573216 Capsella grandiflora
Cagra.3501s0165 1.0kb upstream 1.0kb upstream 1000 false Scaffold3501: 570534-571533 Capsella grandiflora
Cagra.3501s0165 1.0kb downstream 1.0kb downstream 2683 true Scaffold3501: 571534-574216 Capsella grandiflora
Cagra.3501s0165 1.0kb downstream 1.0kb downstream 1000 false Scaffold3501: 573217-574216 Capsella grandiflora
Cagra.3501s0165 2.0kb upstream 2.0kb upstream 3683 true Scaffold3501: 569534-573216 Capsella grandiflora
Cagra.3501s0165 2.0kb upstream 2.0kb upstream 2000 false Scaffold3501: 569534-571533 Capsella grandiflora
Cagra.3501s0165 2.0kb downstream 2.0kb downstream 3683 true Scaffold3501: 571534-575216 Capsella grandiflora
Cagra.3501s0165 2.0kb downstream 2.0kb downstream 2000 false Scaffold3501: 573217-575216 Capsella grandiflora
Cagra.3501s0165 5.0kb upstream 5.0kb upstream 6683 true Scaffold3501: 566534-573216 Capsella grandiflora
Cagra.3501s0165 5.0kb upstream 5.0kb upstream 5000 false Scaffold3501: 566534-571533 Capsella grandiflora
Cagra.3501s0165 5.0kb downstream 5.0kb downstream 6683 true Scaffold3501: 571534-578216 Capsella grandiflora
Cagra.3501s0165 5.0kb downstream 5.0kb downstream 5000 false Scaffold3501: 573217-578216 Capsella grandiflora
Cagra.3501s0165 10.0kb upstream 10.0kb upstream 11683 true Scaffold3501: 561534-573216 Capsella grandiflora
Cagra.3501s0165 10.0kb upstream 10.0kb upstream 10000 false Scaffold3501: 561534-571533 Capsella grandiflora
Cagra.3501s0165 10.0kb downstream 10.0kb downstream 11683 true Scaffold3501: 571534-583216 Capsella grandiflora
Cagra.3501s0165 10.0kb downstream 10.0kb downstream 10000 false Scaffold3501: 573217-583216 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361971 5261 Brassicaceae View MSA
123841424 5264 Brassicales-Malvales View MSA
124337126 5266 SBM View MSA
124241969 5268 Malvidae View MSA
124066653 5270 Rosid View MSA
123752989 5271 Pentapetalae View MSA
122793014 5272 Eudicot View MSA
122045384 5273 Angiosperm View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain